Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2306 ATGTTGTCTGAGTTGGGAAGAAGACCTGTGATTGGCAATAACGAGGGGTGTTTTGGTGATGAATTGGAGAAGGAAATAGGGATGTTGCTCCGCGAACAACGGAGACAAGAAGGCGATGATCGCGAGAGGGATTTGAATATATTTAGGAGTGGATCAGCTCCTCCTACTGTGGAGGGTTCTTTGAATGCTGTTGGAGGGTTGTTTGGTGGTGGTGCTGGTGGTGTTGCTGGTGGTTTTTCAGATTTTCCGGGGAATAAAGATGTGAATGGTGGTGTTTCTGAGGAGGAACTTAGGTCTGATCCAGCTTATCTTCAATACTATTATTCAAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTACTGTCAAAGGAAGATTGGAGGTTTCAACAAAGGCTTAAAGGTGGGGCTTCAGCTGTAGGTGGAATTGGAGATAGGAGGAAAGGTAATATGACTGATGATAATGGTGGTAGGTCAATGTTTTCGACGCCGCCCGGATTTAACTTTAGGAAGCAAGAAAGGAGTGAGGTGGAAAATGAAAAAACTAGAGGTTCTGCTGAATGGGGTGGTGATGGTTTGATTGGTTTGCCTGGCTTGGGACTTAGGAACAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGATATGGAGCGTAACACCCCTGTCACAGGCCTTCCTTCTCGTCCAGCAAGTCGTAATGCTTTTGATGAAAATGTTGATACCGTAAATACTTCTGAAGCAGAGTTGGCTCATGTTCAAGGATCATCTGCGACACAAAATATTGGTCTGCCATCTTCGTATTCTTATGCTGCTGCCCTAGGAGGATCTTCATTGTCAAGAAGCACTACTCCTGATCCACAACATATTGCTAGGGCTCCTAGTCCATGCCTCACACCTATTGGCGGAGGGAGAAGTGCTGCTTCTGACAAGAGAGGCATTGTCAGTCCAGATTCATTTAACGGCGCTTCATCTGGCATGAATGAGTCAGCAGATCTTGTGGCTGCTTTATCCGGGATGAACTTGTCGGCAGAAGTTGAAAACCATTTGCCATCACAGGTTGAGTCAGATGTAGATAATCATCAGAGATACCTTTTTGGTATGCAGGGTGGTCAAGATCACGGCAAGCAACATCCGTATCTAAAAAAATCTGAATCAGGGCATTTGCAGAGTTCAGGTAAGAGTAGGTCAGACCTCAATAATCTATCCCTGCATAGGCAGGCTGAGCTACAAAACTCGACCACTCCTTTGAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTGGAGGAGGTAATATGCCAGCTCAGTATCAGTCTATAGATGGTATGAATTCATCATTCACTAATTATGGCCTAAGCGGTTATGGTGGAAATCCAGCAGCATTGACATCCTTGATGACTAACCAATATGGCACCAGTAATCTGCCACCGCTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCATCACCTGGAATGGACTCGAGAATTCTTGGGGGTGGTTCTCCATCTGATTTACACGGTCTTGGTCGGATGGGAAATCAAATTGCAGGCGCTGCTGCTCTTCAGGCTCCGTTTGTTGATCCAATGTATCTTCAGTACATGAGGACATCGGAGTATGCTGCAGCACAACTTGCTGCTCTTAATGACCCCTCCGTGGACAGAAACTACTTGGGTAATTCGTACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCCGTACTCTCGCCTCAAAAGTCTCAATACAACGTACCACTGGGCGGTAAATCTGGCAACTCCAATCACCACGGTTATTATGGAAATCCAGCATATGGTGTTGGGCTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGGTTCTCCAGTTGGATCTGGAAGTCCTATTAGGCACAATGATCTGAACAACATGCGTTTTGCTTCTGGAATGAGGAACTTAGCTGGGGTCATGGGACCTTGGCATGTAGATGCAGGGAACATGGATGACAGCTTTGCGTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAGCCAAGTGTTTTGAACTCTCTGAAATTGCTGGCCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGCCGATTCATTCAACAGAAGCTCGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATGAGGAAATCATGCCACATGCTCTTGCTTTGATGACCGATGTCTTTGGTAATTATGTAGTTCAGAAGTTTTTTGAGCATGGACTTCCTCCCCAGAGAAGAGAATTAGCCAACAAGCTTATTGGCCATGTTCTTACACTTAGCCTTCAAATGTATGGTTGTCGGGTTATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAAATAGAGATGGTTAAAGAGCTTGATGGTAATATCATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGATGCAATCGACTTTATTATTTCTACATTTTTCGATCAAGTTGTGACACTCTCAACCCATCCATACGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGCGAAAGCTCTGCAACACAGCAGAAAGTTATGGATGAGATTTTAGGCGCTGTTAGCATGCTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTACTGGAACATGGGAAGCCTCATGAGCGTTCTACTATAATAAAGGAGTTAGCTGGGAAGATAGTTCAAATGAGTCAACAAAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACTTTCAGTGGTCCTGCTGAGCGCCAAATACTAGTTAGTGAGATGCTTGGAACCACTGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTATGTTGTCCAAAAGGTGCTGGAAACATGTGATGACCATCAACGTGAACTGATTCTTTCACGAATCAAGGTTCACTTGAATGCATTGAAAAAGTACACCTATGGAAAGCATATCGTCGCACGTGTAGAGAAACTTGTTGCTGCCGGAGAAAGAAGAATGGCTGCTCAGACTCCTCAACCTGCTTAG 3069 0.4396 MLSELGRRPVIGNNEGCFGDELEKEIGMLLREQRRQEGDDRERDLNIFRSGSAPPTVEGSLNAVGGLFGGGAGGVAGGFSDFPGNKDVNGGVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASAVGGIGDRRKGNMTDDNGGRSMFSTPPGFNFRKQERSEVENEKTRGSAEWGGDGLIGLPGLGLRNKQKSLAEIFQDDMERNTPVTGLPSRPASRNAFDENVDTVNTSEAELAHVQGSSATQNIGLPSSYSYAAALGGSSLSRSTTPDPQHIARAPSPCLTPIGGGRSAASDKRGIVSPDSFNGASSGMNESADLVAALSGMNLSAEVENHLPSQVESDVDNHQRYLFGMQGGQDHGKQHPYLKKSESGHLQSSGKSRSDLNNLSLHRQAELQNSTTPLNNSYFKGSPTSHFSGGGNMPAQYQSIDGMNSSFTNYGLSGYGGNPAALTSLMTNQYGTSNLPPLFENVAAASAMASPGMDSRILGGGSPSDLHGLGRMGNQIAGAAALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNVPLGGKSGNSNHHGYYGNPAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWHVDAGNMDDSFASSLLEEFKSNKAKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYEEIMPHALALMTDVFGNYVVQKFFEHGLPPQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVKELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCESSATQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVVEKCLTFSGPAERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMAAQTPQPA* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2306 1022 MobiDBLite consensus disorder prediction 411 435 - -
Mal7g2306 1022 SMART pum_5 868 903 IPR001313 GO:0003723
Mal7g2306 1022 SMART pum_5 831 867 IPR001313 GO:0003723
Mal7g2306 1022 SMART pum_5 946 981 IPR001313 GO:0003723
Mal7g2306 1022 SMART pum_5 759 794 IPR001313 GO:0003723
Mal7g2306 1022 SMART pum_5 723 758 IPR001313 GO:0003723
Mal7g2306 1022 SMART pum_5 904 939 IPR001313 GO:0003723
Mal7g2306 1022 SMART pum_5 687 722 IPR001313 GO:0003723
Mal7g2306 1022 SMART pum_5 795 830 IPR001313 GO:0003723
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 868 903 IPR001313 GO:0003723
Mal7g2306 1022 MobiDBLite consensus disorder prediction 383 397 - -
Mal7g2306 1022 CDD Pumilio 683 1003 IPR033712 GO:0003723
Mal7g2306 1022 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 667 1007 IPR033133 GO:0003723
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 904 939 IPR001313 GO:0003723
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 795 830 IPR001313 GO:0003723
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 940 981 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 874 905 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 691 725 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 954 983 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 806 829 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 909 942 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 835 870 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 763 796 IPR001313 GO:0003723
Mal7g2306 1022 Pfam Pumilio-family RNA binding repeat 727 761 IPR001313 GO:0003723
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 723 758 IPR001313 GO:0003723
Mal7g2306 1022 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1015 - -
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 831 867 IPR001313 GO:0003723
Mal7g2306 1022 MobiDBLite consensus disorder prediction 278 313 - -
Mal7g2306 1022 MobiDBLite consensus disorder prediction 137 189 - -
Mal7g2306 1022 MobiDBLite consensus disorder prediction 171 185 - -
Mal7g2306 1022 MobiDBLite consensus disorder prediction 155 169 - -
Mal7g2306 1022 Gene3D - 667 1013 IPR011989 -
Mal7g2306 1022 Pfam Nucleic acid binding protein NABP 291 686 IPR012940 -
Mal7g2306 1022 SUPERFAMILY ARM repeat 670 1004 IPR016024 -
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 759 794 IPR001313 GO:0003723
Mal7g2306 1022 MobiDBLite consensus disorder prediction 365 397 - -
Mal7g2306 1022 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1015 - -
Mal7g2306 1022 ProSiteProfiles Pumilio RNA-binding repeat profile. 687 722 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2306 Mal-Chr7 81146112 81151732 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2306 K17943 - gmx:100803806 1659.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2306 7 81146112 81151732 Mal7g2306 7 81146112 81151732 ECH
Mal4g0524 4 5027950 5033218 Mal7g2306 7 81146112 81151732 ECH