Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2797 ATGAAATCTATTACTGGCATGAGTTCTTTTAAACCGCCCGCATTTTCGGTGTTGTTTTGTCTACTGATTGGAAGATTGGCCCGTAGTATTGAGCCAACTGTTGTTCATTTCACAACACTCATAGATGGACTGAGTAGATCGGGAAATTTGGACGCTTGCAAATATTATTTTGATGAAATGGTGAGGATTGGGTGCATGCCAGATGTGGTAGCATACACTGTAATGATCACCGGATATGTGGTGGCTGGTGAGATTGAGAAAGCTAAGGAAATGTTCGATGAGATGATTTCTAGAGGAAAAATCCCAAATGTATTTACCTACAATTCCATGATTCGTGGATTTTGTATGGCGGGAAGGTTCGACGAAGCGTGCTCAATGCTTAAGGAAATGGAGGCCAAAGGTTGTAGTCCAAATTTTGTTGTCTATAGTACATTAGTGAGTAATCTACGAAATGCTGGAAAGCTTTCTAGAGCTCGAAAAGTGTTACGGCAGATGATGGAGAAGGGGAGGAATGTCCACCATCTTCCAAAGTTAAGAGCGCGACGATATAGGAAATGA 558 0.4158 MKSITGMSSFKPPAFSVLFCLLIGRLARSIEPTVVHFTTLIDGLSRSGNLDACKYYFDEMVRIGCMPDVVAYTVMITGYVVAGEIEKAKEMFDEMISRGKIPNVFTYNSMIRGFCMAGRFDEACSMLKEMEAKGCSPNFVVYSTLVSNLRNAGKLSRARKVLRQMMEKGRNVHHLPKLRARRYRK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2797 185 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Mal6g2797 185 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 29 182 - -
Mal6g2797 185 SUPERFAMILY TPR-like 68 176 IPR011990 GO:0005515
Mal6g2797 185 Gene3D Tetratricopeptide repeat domain 17 180 IPR011990 GO:0005515
Mal6g2797 185 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 33 67 IPR002885 -
Mal6g2797 185 Pfam PPR repeat 35 65 IPR002885 -
Mal6g2797 185 Pfam PPR repeat 133 165 IPR002885 -
Mal6g2797 185 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Mal6g2797 185 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Mal6g2797 185 TIGRFAM PPR: pentatricopeptide repeat domain 140 169 IPR002885 -
Mal6g2797 185 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
Mal6g2797 185 TIGRFAM PPR: pentatricopeptide repeat domain 37 69 IPR002885 -
Mal6g2797 185 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Mal6g2797 185 Pfam PPR repeat family 67 115 IPR002885 -
Mal6g2797 185 PANTHER OS10G0506000 PROTEIN 29 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2797 Mal-Chr6 72929184 72929741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2797 22 172 Glycosyltransferase AT1G05670 27.632 2.26e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2797 - - mtr:MTR_6g045263 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g2797 6 72929184 72929741 Mal6g2797 6 72929184 72929741 ECH