Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g2274 ATGCCTACAAATTCCCCTGCAATAGGAGAGTGTATTTATGCGGCGTTGATGCCAATCATAGCTGTCTTTGAGGTTTTGGTCTTTGCTGTCGTAGGTTGTTTCAACTCTCATCTTCCCATTTTTCACAATCATACATCTGCATGTGCTGCTTATACTGCTAAGGATTTCATGCGCCTTGCTGAAGAAACTAGATTTACTGTTAATGAAGTGGAGGCATTGCATGAACTGTTTAAAAAGATAAGTAGCTCCCTCATTGATGATGGCTTGATTCACAAGGTGGAGCTTCAATTGGCACTATTTCAAACCCCAAATGGAGAAAATCTTTTTCTTGATCGAGTTTTTGATATTTTTGACGAAAAGAGAAATGGTGTTATCGAGTTTGACGAATTTATCCATGCCCTCAGTGTTTTCCATCCTTATGCACCTATGGATGAAAAAATAGATTTTGCATTTAAGCTCTATGACCTGAGACAAACTGGGTTTATTGAGCCAGAGGAAGTGAAGCAAATGGTTATAGCCATTTTGATGGAATCTGACATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTTGCCAAGACAATTGCTGATGTTGATAGGGACAACGATGGTAGAATCAGTAAAGAAGATTGGAAAGCTTTTGCGAGTCAAAATCCGTCCCTCTTGAAGAACATGACACTTCCTTATTTGAAGAATATCACCACTGCGTTTCCTAGTTTTATTTTCAAATCAGAGGCTGAAATTTGA 747 0.3842 MPTNSPAIGECIYAALMPIIAVFEVLVFAVVGCFNSHLPIFHNHTSACAAYTAKDFMRLAEETRFTVNEVEALHELFKKISSSLIDDGLIHKVELQLALFQTPNGENLFLDRVFDIFDEKRNGVIEFDEFIHALSVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILMESDMNLSDDLLEAIVAKTIADVDRDNDGRISKEDWKAFASQNPSLLKNMTLPYLKNITTAFPSFIFKSEAEI* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g2274 248 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Mal6g2274 248 Pfam EF-hand domain pair 113 132 IPR002048 GO:0005509
Mal6g2274 248 Pfam EF-hand domain pair 145 213 IPR002048 GO:0005509
Mal6g2274 248 CDD EFh 110 171 IPR002048 GO:0005509
Mal6g2274 248 SMART efh_1 146 174 IPR002048 GO:0005509
Mal6g2274 248 SMART efh_1 190 218 IPR002048 GO:0005509
Mal6g2274 248 SMART efh_1 109 137 IPR002048 GO:0005509
Mal6g2274 248 SUPERFAMILY EF-hand 59 240 IPR011992 -
Mal6g2274 248 PRINTS Recoverin family signature 206 226 - -
Mal6g2274 248 PRINTS Recoverin family signature 113 134 - -
Mal6g2274 248 PRINTS Recoverin family signature 160 178 - -
Mal6g2274 248 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Mal6g2274 248 PANTHER CALCINEURIN B-LIKE PROTEIN 10 4 247 - -
Mal6g2274 248 Gene3D - 56 248 - -
Mal6g2274 248 ProSiteProfiles EF-hand calcium-binding domain profile. 142 177 IPR002048 GO:0005509
Mal6g2274 248 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Mal6g2274 248 PANTHER CALCINEURIN B 4 247 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mal6g2274 248 CDD EFh 146 216 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g2274 Mal-Chr6 52524792 52528514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g2274 63 247 EF-hand Containing Proteins AT5G24270 64.324 5.47e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g2274 K06268 - gmx:100810494 357.451