Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1936 ATGAATTCTGGTGATGGATACGCTGTTGAAGTTACTGGTCTTTCACCCAAAGCCACTGATAAAGATGTCTATGAATTTTTCGCTTTCTCTGGTGCTATTCAGCATGTTGAAATTATTAGGTCTGGTGATTATGCTTGTACTGCTTATGTGACCTTCAAAGATGCGTATTCTCAAGACACTGCATGTTTACTCAGCGGAGCCACTATTTTAGACCAACGTGTATGCATAACACGCTGGGGGCAGTATGAAGAAAATGATTTTTGGAGCAGGCCCTCCTATAGCCATGAGGAGGAGAATGCTTATACTACACAACATAGCAGTCAATTTGTTTCCTCAGCTGGAGAAGCAGTTGCTATGACTCAAGAAGTCGTCAAGACCATGCTAGCAAAGGGATATGTTCTTAGTAAAGATGCATTATCTAAGGCTAAACACTTTGATGAGTCGCATCGGGTTTCTGCCACTGCAACAGCCAAGGTTTCTGAATTGAGTCAGAGAATCGGCCTCACTGATAAGATATCTGCTGGTTACGATGCTGTTAAATCTGTCGATCAGAGGTATAATGTCTCTGGAACAACTATGGCAGCTGCATCCGCAACCGGAAGAACAGTAGCAGCGGCTGCAAACACTGTTGTAAATAGTAGCTATTTTTCAAAGGGAGCCTTGTGGATGTCCGGTGCTCTAACCCGAGCTGCTCAAGCTGCATCCGATTTGGGTAACCGTGGTACTAGGCAGTAA 735 0.4408 MNSGDGYAVEVTGLSPKATDKDVYEFFAFSGAIQHVEIIRSGDYACTAYVTFKDAYSQDTACLLSGATILDQRVCITRWGQYEENDFWSRPSYSHEEENAYTTQHSSQFVSSAGEAVAMTQEVVKTMLAKGYVLSKDALSKAKHFDESHRVSATATAKVSELSQRIGLTDKISAGYDAVKSVDQRYNVSGTTMAAASATGRTVAAAANTVVNSSYFSKGALWMSGALTRAAQAASDLGNRGTRQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1936 244 Gene3D - 2 86 IPR012677 -
Mal6g1936 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Mal6g1936 244 CDD RRM_Vip1_like 9 77 IPR034360 -
Mal6g1936 244 SUPERFAMILY RNA-binding domain, RBD 2 89 IPR035979 GO:0003676
Mal6g1936 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 71 IPR000504 GO:0003723
Mal6g1936 244 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 244 - -
Mal6g1936 244 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 4 244 - -
Mal6g1936 244 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1936 Mal-Chr6 41746393 41750658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1936 - - gmx:100805907 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1936 6 41746393 41750658 Mal6g1936 6 41746393 41750658 ECH