Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1905 ATGAAGAGTGACATATCAGTAACAAAACTAGTAGCAAATGGATTATACAAAGAAGCCCTTAACCTCTATTCACACCTCCACTCTTCCTCTTCCACCCCCCATACTCCTAACTCCTTCACCTTCCCCATTCTCCTCAAAGCATGCTCCAATCTCTCTTCCCCTTCCCAAACTCAAATCCTCCATGCCCATCTCTTCAAAACCGGTTTCCAGTCCCACCCTCACACCTGCACTGCCCTCACTGCCGCCTATGCTGCAAACCCCCACTCTTTCCATTACGCTCTCAAACTGTTCGATGAAATGCCTCAACCAACTATCTCCACCTTTAACGCGGCATTTTCTGGACTCTCGCGAAACGGGCCTGGCGGTGAAGCTTTTGGGCTTTTTCGCCGAATTTGGCTTTGGAAGCTTAGGCCCAATTCTGTCACAATCGCGTCTTTACTCGCTGCACGTGATGTAAAAAATGAAAGTCATGTGCAGCAGGTTCATTGCTTGGCATGCAAGTTAGGAGTTGAATATGATGTTTATGTTTCTACTTCGCTTGTCACTGCTTATTCGAAATGTGGAGATTTGGTATCTTTGAATAAGGTTTTTGAAAATTCGCAGGTGAAAAATGTGGTTACTTACAATGCTTTTATGTCGGGATTGTTGCAAAACGGGTTTCCAAGTATTGTTTTTTATGTTTTTAAGGATATGATGATGAATTCGGAGGAAAAACCGAATATGGTGACTTTGGTTTCTGTTGTTTCAGCATGTGCTACCCTTTCGAACATTCGATTGGGGAAGCAGGCTCATGGGCTTAGTATGAAACTAGAAGCTTGTGATCATGTTATGGTGGTGACTTCACTTGTGGATATGTATTCAAAGTGTGGTTGTTGGAGTTCTGCTTTTGATGTTTTTAATGAAAGTGAAAAGAAGAACTTGATCACTTGGAACTCTATGATTGCTGGAATGATGATGAATTCAGAGAGTGAGAGAGCTGTTGAATTGTTTGAGAGGATGGTGGATGAAGGGGTTTTGCCTGATTCAGCAACTTGGAACTCTTTGATTGGTGGGTTTGCACAAAAAGGAGTGTGTGTTGAAGCTTTTAAGTACTTTAGGAAAATGCAATGTGCTGGTGTGGTTCCATGTTTGAAGATTGTGACTAGTATTTTGTCTGCGTGTGCCGAGTCATCTGTGTTAAGAAGGGGGAAAGAGATACATGGGTATGCTTTGAGAGTTTATGTTGATAAGGATGATTTTCTTGCAACTGCTTTGGTTGATATGTATATGAAATGTGGGTGTGTTTCTTTGGCACGTTGTGTTTTTGATCAGTTTGATCCAAAGCCAGATGATCCTGCATTTTGGAATGCAATGATAGGAGGGTATGGAAGGAATGGAGATTATGAGTCAGCTTTTGAAATCTTTGATGAAATGTTGGCTGAAATGGTTCAACCAAACAGTGCAACATTTGTTAGTGTTTTATCTGCTTGTAGCCACAGTGGTCAAGTTGAGAGAGGGTTACATTTTTTCAGAATGATTAGAGAGTATGGTTTGGATCCAAAGCCTGAACATTTCGGTTGTGTGGTTGATCTTTTGGGTCGAGCCGGTCGGTTGGGCGAAGCTCGAGATTTGGTGCAAGAATTAGCAGAACCTCCTACATCTGTTTTTGATTCTTTGCTTGGTGCATGTAGGTGCTACCTAGACTCCAATCTTGGGGAAGAAATGGCCATGAAACTTCTTGATATGGAACCGGAAAATCCGGCGCCACTGGTGGTTTTGTCTAACATATATGCTGCATTAGGAAGATGGAGGGAAGTAGAAAGGATAAGAGGGTTGATCAAAGATAAACAATTGGGCAAACTCTCTGGTGTTAGCATGATAGAAGTTGCATGA 1872 0.422 MKSDISVTKLVANGLYKEALNLYSHLHSSSSTPHTPNSFTFPILLKACSNLSSPSQTQILHAHLFKTGFQSHPHTCTALTAAYAANPHSFHYALKLFDEMPQPTISTFNAAFSGLSRNGPGGEAFGLFRRIWLWKLRPNSVTIASLLAARDVKNESHVQQVHCLACKLGVEYDVYVSTSLVTAYSKCGDLVSLNKVFENSQVKNVVTYNAFMSGLLQNGFPSIVFYVFKDMMMNSEEKPNMVTLVSVVSACATLSNIRLGKQAHGLSMKLEACDHVMVVTSLVDMYSKCGCWSSAFDVFNESEKKNLITWNSMIAGMMMNSESERAVELFERMVDEGVLPDSATWNSLIGGFAQKGVCVEAFKYFRKMQCAGVVPCLKIVTSILSACAESSVLRRGKEIHGYALRVYVDKDDFLATALVDMYMKCGCVSLARCVFDQFDPKPDDPAFWNAMIGGYGRNGDYESAFEIFDEMLAEMVQPNSATFVSVLSACSHSGQVERGLHFFRMIREYGLDPKPEHFGCVVDLLGRAGRLGEARDLVQELAEPPTSVFDSLLGACRCYLDSNLGEEMAMKLLDMEPENPAPLVVLSNIYAALGRWREVERIRGLIKDKQLGKLSGVSMIEVA* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1905 623 Gene3D Tetratricopeptide repeat domain 157 262 IPR011990 GO:0005515
Mal6g1905 623 Gene3D Tetratricopeptide repeat domain 263 401 IPR011990 GO:0005515
Mal6g1905 623 Pfam PPR repeat family 447 491 IPR002885 -
Mal6g1905 623 Pfam PPR repeat family 305 353 IPR002885 -
Mal6g1905 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Mal6g1905 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Mal6g1905 623 PANTHER OS07G0578800 PROTEIN-RELATED 8 618 IPR045215 GO:0003723|GO:0009451
Mal6g1905 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Mal6g1905 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Mal6g1905 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 239 IPR002885 -
Mal6g1905 623 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 8 618 - -
Mal6g1905 623 Gene3D Tetratricopeptide repeat domain 4 156 IPR011990 GO:0005515
Mal6g1905 623 Gene3D Tetratricopeptide repeat domain 444 620 IPR011990 GO:0005515
Mal6g1905 623 Pfam E motif 559 621 IPR046848 -
Mal6g1905 623 TIGRFAM PPR: pentatricopeptide repeat domain 344 375 IPR002885 -
Mal6g1905 623 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Mal6g1905 623 TIGRFAM PPR: pentatricopeptide repeat domain 448 479 IPR002885 -
Mal6g1905 623 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Mal6g1905 623 Pfam PPR repeat 206 233 IPR002885 -
Mal6g1905 623 Pfam PPR repeat 106 130 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1905 Mal-Chr6 40333244 40335115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1905 36 623 Glycoside Hydrolase AT3G49170 29.362 2.02e-79 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1905 - - gmx:100809263 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1905 6 40333244 40335115 Mal6g1905 6 40333244 40335115 ECH