Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1750 ATGGTACTTCTTCAATGTCCTTTATGTTGTTGCTACACACAAAACCAAGAAAACACAGAACCTCACTCTCATGATCACATTCATTCAGAATCATCAACATCAACCTCTTCTTCTCTTTCTTCACAACCAAGTTTACCTTCTGTTCCTTCTCTCACCTCACAACAATCTCAAACCACACATCACAAACTTCTAACAACAATCAATGGCAATTCTTCCCCTATCTCTTCCCTCACTCTACACTCCAAATTCCTCTATAGTGGCTCTTCAAATAGTGAAATTAGAAGATTTGACAAAGACCCTTTTGCCCTTCAAGCCTCAAACAACACCAACAATTTGGTTGCAATTAGTAATGGATCAAAATCAACCATTAAGTCAATGATTGTTGTTGATGATATGTTATTTAGTGCTCACCAAGATCATAAAATCCGAGTTTGGAAAATCGAAACAACAACACCAACAACAACAACTAGTAGTAATACTAATCAAGAACAGAGGCTATTCAAGTGCATAGCAACACTTCCAACTTTCAATGATCGATTTTCGAAGCTTTTTTCGTCGAAAAATTATGTCGAAGTTCGGAGACATAAGAAGTATACATGGGTGAATCATATTGATGCTGTTTCATCTCTTGCTGTTTCAAAAGATGGGTTTTTTCTTTACTCTGCTTCGTGGGACAGAACATTCAAAATTTGGAGAGTTTCTGATTTTAAGTGTTTAGAGTCTATGAAAAATGCACATGAAGATGCAATTAATGCAATTGTTGTTTCTTCTGGTGGGGTTGTTTATACAGGCTCAGCTGATAGAAAGATCAAAATTTGGAAGAAGAAAAATCATGAAGAAGGTGAGAAAAATAAAAATAAAAATAGAAAGCATTTTTTGGTTGGAACATTGGAGAAGCATAAATCAGCTGTGAATGCTTTAGCACTTAACAAAGATGGTTCAGTTTTGTATTCAGGTGCTTGTGATAGATCAATTTTAGTTTGGGAAAAAAGTAATAGCATTATTCGAAATTGTTCCGGACTGGACCAAGACCCAGACGACGAAAATATGGTGTTAGTTGGGGCCCTTAGAGGGCATACTAAGGCTATATTGTGTTTGGTTGTAATGGATGATTTGGTGTGTAGTGGATCAGCTGATAACACTGTTAGGTTATGGAAAAGAGGAATTGATGAAAAAAGTTATGCATGTTTGGCTGTTTTGCAAGGTCATAGAAAAGCTGTGAAGTGTTTGGCTATGGCAGATGATTCCAAACGTGATAAAAATGGTGGGGTTGATGATGATGGAAGTTCTTATCTTGTTTACAGTGGTAGTCTTGATTGTGACATCAAAGTTTGGCAAATACGCGTTCCCTTGATTTGA 1359 0.365 MVLLQCPLCCCYTQNQENTEPHSHDHIHSESSTSTSSSLSSQPSLPSVPSLTSQQSQTTHHKLLTTINGNSSPISSLTLHSKFLYSGSSNSEIRRFDKDPFALQASNNTNNLVAISNGSKSTIKSMIVVDDMLFSAHQDHKIRVWKIETTTPTTTTSSNTNQEQRLFKCIATLPTFNDRFSKLFSSKNYVEVRRHKKYTWVNHIDAVSSLAVSKDGFFLYSASWDRTFKIWRVSDFKCLESMKNAHEDAINAIVVSSGGVVYTGSADRKIKIWKKKNHEEGEKNKNKNRKHFLVGTLEKHKSAVNALALNKDGSVLYSGACDRSILVWEKSNSIIRNCSGLDQDPDDENMVLVGALRGHTKAILCLVVMDDLVCSGSADNTVRLWKRGIDEKSYACLAVLQGHRKAVKCLAMADDSKRDKNGGVDDDGSSYLVYSGSLDCDIKVWQIRVPLI* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1750 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 329 - -
Mal6g1750 452 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 450 IPR045182 -
Mal6g1750 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 386 - -
Mal6g1750 452 Gene3D - 278 450 IPR015943 GO:0005515
Mal6g1750 452 Gene3D - 186 277 IPR015943 GO:0005515
Mal6g1750 452 SUPERFAMILY WD40 repeat-like 61 447 IPR036322 GO:0005515
Mal6g1750 452 SMART WD40_4 193 232 IPR001680 GO:0005515
Mal6g1750 452 SMART WD40_4 349 386 IPR001680 GO:0005515
Mal6g1750 452 SMART WD40_4 393 446 IPR001680 GO:0005515
Mal6g1750 452 SMART WD40_4 60 97 IPR001680 GO:0005515
Mal6g1750 452 SMART WD40_4 290 329 IPR001680 GO:0005515
Mal6g1750 452 SMART WD40_4 235 274 IPR001680 GO:0005515
Mal6g1750 452 SMART WD40_4 109 146 IPR001680 GO:0005515
Mal6g1750 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Mal6g1750 452 Pfam WD domain, G-beta repeat 294 328 IPR001680 GO:0005515
Mal6g1750 452 Pfam WD domain, G-beta repeat 353 386 IPR001680 GO:0005515
Mal6g1750 452 Pfam WD domain, G-beta repeat 199 231 IPR001680 GO:0005515
Mal6g1750 452 Pfam WD domain, G-beta repeat 237 274 IPR001680 GO:0005515
Mal6g1750 452 Pfam WD domain, G-beta repeat 395 445 IPR001680 GO:0005515
Mal6g1750 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 329 IPR001680 GO:0005515
Mal6g1750 452 Gene3D - 51 185 IPR015943 GO:0005515
Mal6g1750 452 MobiDBLite consensus disorder prediction 30 60 - -
Mal6g1750 452 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Mal6g1750 452 PRINTS G protein beta WD-40 repeat signature 433 447 IPR020472 -
Mal6g1750 452 PRINTS G protein beta WD-40 repeat signature 219 233 IPR020472 -
Mal6g1750 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 274 IPR001680 GO:0005515
Mal6g1750 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Mal6g1750 452 MobiDBLite consensus disorder prediction 19 60 - -
Mal6g1750 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 386 IPR001680 GO:0005515
Mal6g1750 452 CDD WD40 63 446 - -
Mal6g1750 452 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 25 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1750 Mal-Chr6 33477669 33479027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1750 130 389 Acyl Lipid Metabolism Gene Families AT3G18860 23.443 9.11e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1750 - - cam:101511687 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1750 6 33477669 33479027 Mal6g1750 6 33477669 33479027 ECH