Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1506 ATGGGTTGCTTCCACTCTAAAGGAATAAGATTTTCAGGAGATGAAGACCCAATAATTCTAGCATCAGAAACATCTTTTGGTGTTAGTGACATTGAAGCATTATTTGAGCTTTTTAAGAGCATTAGTGGATCGATCATTGATGATGGACTAATAAGCAAGGAAGAACTTCAATTGGCAATTTTCAATAATAAAACAAAGGAGAATCTCTTCACAAATCGGATCTTTGATCTATTTGATGTGAAAAGGAAGGGAGTAATTGACTTTGGTGACTTTGTGAGAGCACTTAATGTCTTCCACCCTAATGCACCGCAAGAAGTCAAGATAGATTTTTCTTTTAGGCTCTATGATTTGGACAATACAGGTTTTATAGAGCGCGATGAGGTCAAACAAATGATAAATGCGCTTCTTTGTGAATCTGAAATTAAATTGAGCGATGACATGATAGAAACAATTATTCAAAAGACTTTCTTGGATGCTGATCCAAACCAAGATGGAAAAATAGACAAATCTGAGTGGCAAAACTTTGTTTCTCAAAATCCATCATTGTTAAAAATCATGACACTACCTTATCTAAGGGATATAACAACAATTTTCCCAAGTTTTGTATTTCACTCGAAGGTGGATGATGACATTGCTACTTGA 642 0.3489 MGCFHSKGIRFSGDEDPIILASETSFGVSDIEALFELFKSISGSIIDDGLISKEELQLAIFNNKTKENLFTNRIFDLFDVKRKGVIDFGDFVRALNVFHPNAPQEVKIDFSFRLYDLDNTGFIERDEVKQMINALLCESEIKLSDDMIETIIQKTFLDADPNQDGKIDKSEWQNFVSQNPSLLKIMTLPYLRDITTIFPSFVFHSKVDDDIAT* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1506 213 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mal6g1506 213 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Mal6g1506 213 PRINTS Recoverin family signature 121 139 - -
Mal6g1506 213 PRINTS Recoverin family signature 74 95 - -
Mal6g1506 213 PRINTS Recoverin family signature 167 187 - -
Mal6g1506 213 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Mal6g1506 213 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Mal6g1506 213 PANTHER CALCINEURIN B-LIKE PROTEIN 1 213 - -
Mal6g1506 213 SMART efh_1 107 135 IPR002048 GO:0005509
Mal6g1506 213 SMART efh_1 151 179 IPR002048 GO:0005509
Mal6g1506 213 SMART efh_1 70 98 IPR002048 GO:0005509
Mal6g1506 213 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Mal6g1506 213 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Mal6g1506 213 CDD EFh 107 177 IPR002048 GO:0005509
Mal6g1506 213 SUPERFAMILY EF-hand 22 202 IPR011992 -
Mal6g1506 213 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Mal6g1506 213 Gene3D - 17 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1506 Mal-Chr6 28045660 28048617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g1506 1 213 EF-hand Containing Proteins AT4G17615 74.299 6.33e-116 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1506 K06268 - gmx:100779020 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1506 6 28045660 28048617 Mal6g1506 6 28045660 28048617 ECH
Mal6g1506 6 28045660 28048617 Mal5g3805 5 106606106 106609353 PCT