Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1486 ATGGACTCAACGCAGAACAATCTCTTCGACACCGCTTCACAACCCGACACCGGAACCGACGCATATACTTTCCTCGAATTCAACACCCAAGGCGAAGATTTCGACTATCCTGACTTTCGCGACCCGATTAGGTCACCCGTTGCATGGCCTACACCTTCCGATTCACTAGCTGACCCAACCGGTTCCGCCGGGTCGGATCATCACTCAGATGCATCGCCTGTTTCCGCTGCGGCTCCGGGTAGCGCGACGAAAGGTGGTAGGTCGGGTGGGGGAAGTGGAAGCGCGTCGCAGATGGTGGATTCGCTTGCGGCAGGGATGAGTGGGTTGAATTTTGAAGATACTGGTGATGACGATAATTATGAGTTTGGGAAAGGGGATTTTACTGAACATGCTTGTCGTTATTGTGGAGTTTCGAATCCTGCTTGTGTTGTGAGGTGTAATGTGCCTTCTTGTCGGAAATGGTTTTGTAATTCGAGAGGAAATACTTCTGGATCGCACATTGTTAATCATCTGGTTCGGGCAAAGCACAAGGAAGTCTGTCTGCACAAAGACAGTCCATTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAACGTGTTTCTCCTTGGATTTATATCTGCAAAGACAGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGTTTGAGTGTCAATGCTTTGAAGGATATGAATTGGGACCTTACTCAATGGTGTCCCTTGATTGATGATAGATGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAACAGTTAAGGGCACGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAGGAATTGTGGAAGACAAACCCCGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGACGATGAACCTCAGTCAGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAACCTCACAATTCGATGGGATATTGGTCTCAATAAGAAGCGTGTTGCATATTTTGTATTTCCAAAGGAAGATAATGAGTTACGGCTTGTACCTGGTGATGAGCTACGTTTGCGTTATTCTGGTGATGCTGCACATCCTTCGTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCGTTGGAACTTCGGGCTAGTCAGGGGGTTCCAGTTGATGTCAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACCAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCTGTAGATGAGACAAGTGTCAGTGGGTATATATATCACCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCCCGTCGCTTTGGTGCACCGGGGCTTCCAGAACTGAATGCATCTCAAGTGTTTGCTGTCAAGAGTGTCCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCCAAACAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTAGCCGTGGACCAGTTGGCTGAAAAGATAAGTGCTACTGGATTGAAGGTTGTGAGACTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACATCTGATAAGAGTGAACTGCACAAGTTACAACAGCTAAAAGATGAACAAGGAGAACTTTCTAGCAGTGATGAGAAAAAGTACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATTTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGATTCCGTCAGGTACTTATTGACGAGTCCACTCAAGCAACAGAACCTGAGTGCCTCATTCCTTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGGGCTGGGTTAGCACAGTCACTATTTGAACGCCTTGTTCTTCTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGTTTTTATGAAGGCACCCTACAAAATGGAGTTACTGTTAATGAGAGACAATCTACAGGAATTGATTTTCCTTGGCCTGTACCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGTACATCTTATTTGAATAGGACCGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTTTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTTATAACACCTTACGAGGGGCAAAGAGCTTATATTGTAAACTATATGTCAAGAAATGGTGCTCTTAGGCAGCAACTTTACAAAGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTATATCATTCTATCATGTGTTAGAAGTAATGAACATCAGGGAATCGGATTCCTGAATGACCCTAGGAGACTCAATGTTGCTCTGACACGAGCAAGATATGGTATTGTTATACTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCTCTGTGGAATGGTTTATTGACTCACTATAAGGAACATGAATGCTTGGTTGAAGGGCCTTTAAATAACTTGAAGCAGAGTATGGTCCAGTTCCAGAAACCCAAAAAGATTTACAATGAACGTAGGCTTTTTTATGGGGGTGGACCTGGAGTTGCTGCTAATGATAATTTTGGTTCTGGTGCTGGCACAAGTTCAGATCGGAGGACTGGTCGAGGAAGGGGATCTTATATGCCTTCTGGTCCACCAAATGGAAATCACAAACCTGGACTGCATCCTGCTGGGTTTCCTGTGCAAAGGGTTCCCTTGCCTCCTTTCCATGGTGGTCCCCAATCTCAACCATATGCCATTCCTTCACGCGGGGCTGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCAGGGAGTCGGGGTTTTGGGGCTGGGAGAGGTAATTCTGGTGCTCCAATTGGCAATCATCTTCCACACCAAGGCACCCAACCACCTATTGGGAATCTTGGATCTGCATTTAATTTCCCTGCTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGTGGTCCATTGTCTCAACCCGGCTTTGCTAATAATATGCCGGTCCAAGGGGCGGGCCAGTCATTTCGAGATCAATTTTCTGTCCCTGGAATGTCTCAGGACTTCTTGGGTGATGATTTCAAGAGCCAAGGATCTCATGTTCCTTATAATGTAACTGATTTTTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCAACACAAGGAGCACAAGGTGGGTTCCCAGGGAACTTTCTTAATCAGAATTCTCAAGCTGGTTATTCACGCTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGGCCATGGATCTCAAGGCCTTTTCACTCAGGTTGGGTTCAGCGATCCCTTGCAAGATGATGCAACACAGAACCATTTCAATGTGGCTAATTCCAACCCTCTTCAATCACAGATGAATTCACTCTACTCCCAGCCTTTTGCTCATTACAACACACAGCCACTGAATATGCAGGCTTCTCAACAACAGCCTCAGGGTCAGAACTCCCAGAATCAAAAAATTCACTACAACGGTTGA 3783 0.4494 MDSTQNNLFDTASQPDTGTDAYTFLEFNTQGEDFDYPDFRDPIRSPVAWPTPSDSLADPTGSAGSDHHSDASPVSAAAPGSATKGGRSGGGSGSASQMVDSLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLTQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPSWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAANDNFGSGAGTSSDRRTGRGRGSYMPSGPPNGNHKPGLHPAGFPVQRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQGTQPPIGNLGSAFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFSDPLQDDATQNHFNVANSNPLQSQMNSLYSQPFAHYNTQPLNMQASQQQPQGQNSQNQKIHYNG* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1486 1260 Pfam AAA domain 580 683 IPR041677 GO:0004386
Mal6g1486 1260 CDD SF1_C_Upf1 716 905 IPR041679 -
Mal6g1486 1260 Pfam RNA helicase (UPF2 interacting domain) 130 283 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Mal6g1486 1260 Pfam AAA domain 693 888 IPR041679 -
Mal6g1486 1260 MobiDBLite consensus disorder prediction 948 990 - -
Mal6g1486 1260 MobiDBLite consensus disorder prediction 1240 1260 - -
Mal6g1486 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 939 IPR027417 -
Mal6g1486 1260 MobiDBLite consensus disorder prediction 1053 1083 - -
Mal6g1486 1260 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 489 621 IPR014001 -
Mal6g1486 1260 PANTHER DNA2/NAM7 HELICASE FAMILY 106 1010 IPR045055 -
Mal6g1486 1260 Gene3D - 336 424 - -
Mal6g1486 1260 MobiDBLite consensus disorder prediction 1003 1083 - -
Mal6g1486 1260 CDD ZBD_UPF1-like 131 253 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Mal6g1486 1260 CDD 1B_UPF1-like 336 423 IPR040812 -
Mal6g1486 1260 MobiDBLite consensus disorder prediction 1 26 - -
Mal6g1486 1260 MobiDBLite consensus disorder prediction 55 69 - -
Mal6g1486 1260 CDD DEXXQc_UPF1 480 715 - -
Mal6g1486 1260 Gene3D - 715 926 IPR027417 -
Mal6g1486 1260 Pfam Type III restriction enzyme, res subunit 486 548 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mal6g1486 1260 Pfam RNA helicase UPF1, 1B domain 335 424 IPR040812 -
Mal6g1486 1260 MobiDBLite consensus disorder prediction 1 98 - -
Mal6g1486 1260 Gene3D - 566 618 - -
Mal6g1486 1260 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 106 1010 - -
Mal6g1486 1260 Gene3D - 444 714 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1486 Mal-Chr6 27526701 27539918 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1486 K14326 - gmx:100795594 2421.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1486 6 27526701 27539918 Mal6g1486 6 27526701 27539918 ECH