Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1064 ATGGAACAACCGAAGCTAGAACCACCAGCAACACCGGCGGTTCCCGCGGCGGAGATGAAGCAAGTCGGAGTTTCAACGAAGGTAGTTACCGATGTTAACACGAAGGAGAGAGACGGCGGTTGTTGTACGACGCCGAAAGTAGTTCTGGCCGTTGCCGCCGAGAACAGTGACGTTATGAAGAAGAAGCGCGGTCGTCCGGTGAAAGCGAAAGGAATACCGAAAGCAGCTCCTCCGCCGAAGCAGATCAAGAAGGAAGATGAAGACGTTTGTTTCATATGCTTCGATGGTGGAAGTCTCGTTCTCTGCGATCGTCGGGGTTGTCCTAAAGCGTATCATCCGGCATGTGTCAAGCGAGATGAAGCGTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAACATCCCATTATATGTGCTATACTTGTACAAATTCTTTTTGCAAAGGGTGTATACAAAATGCTGATTTTGTTTGTGTCAGAGGAAATAAAGGTTTGTGTGGAATATGCAAGAAAACTATAATGCTGATTGAGAACTGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGAGAGTCTATCTTTAACATTTGATGAGCTCGTTCAAGCTAAAAACCCATTGAGTGTTGCTGCTCCTATGGTTCAAACTTCCCACAAACATTATCATCTTAAAGACGACAAAGGTTCTGGTTTTGAGAACTCCTGTATAGATATAGAATCAAATAATTTGAAAAACAAGAAGTCTAAGGGACCTTCAGGTGGTGACACGGGTGTGTTTTTGCCTGAATGCACAAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCCCATATGAAAAATGGTGATACATCTCTACTGTCTCAATTTGATGTCCAAAATCTCTTGCTGGAGTATGTAAAGAAAAACAATCTGCGTGATCCTCAACAAAAATCTCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAGAGCACGTCTTGGCTACATTGAAATGCTAATGCTCCTTGAACCCCACTTTCTTATAAAAGAAAATACATGTGCAGAGAATAATTTTGGAGCAGGAATTAGTGATGTTGTTGCTAATGGAAAGGAGGCCATTGATAATAACAATAAACAGTCAGTATTAGCTAATGATAAGAGATGCACAACAAGTAAAAAGGATGACGTGCCTGTGCCACAAAATAATCAAGATGCATATGCTTCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACTGATGATACTGAAAGGATTCACGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACGTTACAAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTGAACTTAAACCGGAAGGAGGTCATATCTATTGATGAGATTTCAAATCAGGAGTTCTCTGAGGATGAATGCAAGCGATTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATTCTGAACAAAGCGTTGACATTTCAAGAAATTAGAGTTAATGATCTACTAAATTCACCGGAGGAACGTCAGCGCAGGCTGCATGAAGTTCCAGATGTACACTCTGACCCCAATTTGGATTCATTGTATGAGTCGGATGAAGATGTTGGAGAGTCAGATGACAATAAACAAGATGGCAATATACCTATTTTCTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGCAGAACACGAGACTTGACCGCTTCCAGTGACCCAATTGGGAATACATGCTTAGCAAAGAAGCATATTGACCCTAACGAAACTACTATTGATGATAGTGCTAATGTTGTAATGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCATCTCCACTTGTCTCTACAGGGATTGAGCAGCCGTTTGGTGATTTTATGAATGATAAATCATGGCATTATCAGGATCCATCTGGGAAGGTTCAAGGTCCTTTTGCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAAAGTATGGAGGATAGGTGAGAAACAAGCAAACTCTATATTGTTAACTGATGCACTTAATGGGAAGTGCTCCAAAAATGTGCCATTGCAGCACAACAGCCTAGTGCTCTCTTTAGGAGCCAGTGTTGTATTGGCTGACAAAGAAAGCAGTCAGGATGGTGGGAGGAATTCAATAACAAATGAAATTTCTGCAGATAGCCAAGTCATCGAACATATAAAAGAACAAAAAGTGGATGATACTTCTACCCAGTCTAATGGTAAAGATGAATCCGTTAGGAGTAATGGATGGCATGACCAGTCACATGTACATCCTTCTGTACAACCAACTGCCTTTTCCGAGAAATTGAATGATAATCATACCAACAAATTAAGAGAGGATCATGGGATTGAGAAAAATTCTGAAGATAATGGAAATCATGGCTTGAACAGGACTTCTGGTGACCAGAGTGATAGTGGTCAGAATCATCAGAAGCAATCAGATAGTGAAGACAACTCAGGGCAATCTTCGGCACAAAACTGGAGACACCCTAATGTAAATATTTCTTCTAATTGCTTGGATACCACATCGACTCATGTTTCTGAGACAAGAACATCACCACTTAGGCTGGGATTTGATTTGCACCGCCCCCCTTCCCCTCCAGCATGTAATACAACTACATGGCAGGCTATTATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTTGAGGCAATGGAGTCGCTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGTCCAATGCTCGATGCAGGTAAAGGTGATGCATTGAGCTCCACATGTGATTTACAGTTACTATCTCAATCTACAGCAGCAGAGGAATCGTTACAGCAAGCAGATGTCCATCATCCTCATCCTCATCCTCATCCTCCTCATCATCAAAGAATATCAGAGGAGCTTGAGCTTTCCTCAAGAAATTCTAAAGTTGATGTGGGTTCAAAGAACATATGTGTTTCAAGTAACCAATGGGAGTCAGGCTCGGAAAATTCTATTTTTCCGTCCACTGCAACATTGGGCATGACTGTAGACACCACTTGGAGACTTGGATTGGAAAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACGCGAGTTGGGGAGTAGGACATACGGCAGTGAATGAGAACAGAAGCTCAAATTCATGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAACCAAACAAGATACGGAAGTGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGCAGAGCTGCGTGGAACAGGCAACCAGTATTTGGTGTTGGTAATGGAGGCTCATATAGACCTCAGCCCAAAGGGCAGCGGGTTTGTAAATTTTATGAAAATGGGTACTGTAGGAAAGGGGCATCCTGTGATTACTTCCACCCATGA 3699 0.4207 MEQPKLEPPATPAVPAAEMKQVGVSTKVVTDVNTKERDGGCCTTPKVVLAVAAENSDVMKKKRGRPVKAKGIPKAAPPPKQIKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKTSHYMCYTCTNSFCKGCIQNADFVCVRGNKGLCGICKKTIMLIENCAQGNKEMCEVDFDDKSSWEYLFKVYWMYLKESLSLTFDELVQAKNPLSVAAPMVQTSHKHYHLKDDKGSGFENSCIDIESNNLKNKKSKGPSGGDTGVFLPECTRWASKELLEFVSHMKNGDTSLLSQFDVQNLLLEYVKKNNLRDPQQKSQIVCDSRLVNLFGRARLGYIEMLMLLEPHFLIKENTCAENNFGAGISDVVANGKEAIDNNNKQSVLANDKRCTTSKKDDVPVPQNNQDAYASINAHNINLIYLRRSLMESLTDDTERIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAERYKIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLNSPEERQRRLHEVPDVHSDPNLDSLYESDEDVGESDDNKQDGNIPIFSRIWDGVLNGVGGRTRDLTASSDPIGNTCLAKKHIDPNETTIDDSANVVMKSEVSSVAVDISSPLVSTGIEQPFGDFMNDKSWHYQDPSGKVQGPFAMLQLYKWNASGHFPPDLKVWRIGEKQANSILLTDALNGKCSKNVPLQHNSLVLSLGASVVLADKESSQDGGRNSITNEISADSQVIEHIKEQKVDDTSTQSNGKDESVRSNGWHDQSHVHPSVQPTAFSEKLNDNHTNKLREDHGIEKNSEDNGNHGLNRTSGDQSDSGQNHQKQSDSEDNSGQSSAQNWRHPNVNISSNCLDTTSTHVSETRTSPLRLGFDLHRPPSPPACNTTTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPMLDAGKGDALSSTCDLQLLSQSTAAEESLQQADVHHPHPHPHPPHHQRISEELELSSRNSKVDVGSKNICVSSNQWESGSENSIFPSTATLGMTVDTTWRLGLESTHLEWGGMDQRNANASWGVGHTAVNENRSSNSCTSVVTPSFGDNQTRYGSDRFSVPRDRGFPGHGREPGLVRGRAAWNRQPVFGVGNGGSYRPQPKGQRVCKFYENGYCRKGASCDYFHP* 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1064 1232 SMART gyf_5 695 750 IPR003169 GO:0005515
Mal6g1064 1232 ProSiteProfiles Zinc finger C3H1-type profile. 1207 1232 IPR000571 GO:0046872
Mal6g1064 1232 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 935 1232 - -
Mal6g1064 1232 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 935 1232 - -
Mal6g1064 1232 SMART rtf1 430 540 IPR004343 GO:0003677
Mal6g1064 1232 MobiDBLite consensus disorder prediction 1031 1067 - -
Mal6g1064 1232 SUPERFAMILY GYF domain 693 747 IPR035445 -
Mal6g1064 1232 MobiDBLite consensus disorder prediction 795 824 - -
Mal6g1064 1232 MobiDBLite consensus disorder prediction 775 841 - -
Mal6g1064 1232 MobiDBLite consensus disorder prediction 778 794 - -
Mal6g1064 1232 ProSiteProfiles Plus3 domain profile. 430 563 IPR004343 GO:0003677
Mal6g1064 1232 SUPERFAMILY CCCH zinc finger 1207 1231 IPR036855 GO:0046872
Mal6g1064 1232 CDD PHD5_NSD 89 134 - -
Mal6g1064 1232 Gene3D - 696 752 IPR035445 -
Mal6g1064 1232 SUPERFAMILY Plus3-like 432 560 IPR036128 GO:0003677
Mal6g1064 1232 SMART PHD_3 89 135 IPR001965 -
Mal6g1064 1232 Gene3D SWIB/MDM2 domain 288 376 IPR036885 -
Mal6g1064 1232 ProSiteProfiles Zinc finger PHD-type profile. 87 153 IPR019787 -
Mal6g1064 1232 ProSiteProfiles GYF domain profile. 694 748 IPR003169 GO:0005515
Mal6g1064 1232 ProSiteProfiles SWIB/MDM2 domain profile. 287 370 IPR003121 -
Mal6g1064 1232 SUPERFAMILY SWIB/MDM2 domain 292 369 IPR036885 -
Mal6g1064 1232 Gene3D - 431 560 IPR036128 GO:0003677
Mal6g1064 1232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 178 IPR013083 -
Mal6g1064 1232 SUPERFAMILY FYVE/PHD zinc finger 72 134 IPR011011 -
Mal6g1064 1232 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 40 928 - -
Mal6g1064 1232 MobiDBLite consensus disorder prediction 578 608 - -
Mal6g1064 1232 SMART swib_2 291 373 IPR019835 -
Mal6g1064 1232 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 40 928 - -
Mal6g1064 1232 Pfam GYF domain 697 740 IPR003169 GO:0005515
Mal6g1064 1232 CDD GYF 694 749 IPR003169 GO:0005515
Mal6g1064 1232 Pfam SWIB/MDM2 domain 295 368 IPR003121 -
Mal6g1064 1232 Pfam Plus-3 domain 435 538 IPR004343 GO:0003677
Mal6g1064 1232 MobiDBLite consensus disorder prediction 866 919 - -
Mal6g1064 1232 MobiDBLite consensus disorder prediction 1038 1065 - -
Mal6g1064 1232 CDD SWIB-MDM2_like 292 368 - -
Mal6g1064 1232 ProSitePatterns Zinc finger PHD-type signature. 90 150 IPR019786 -
Mal6g1064 1232 MobiDBLite consensus disorder prediction 855 919 - -
Mal6g1064 1232 MobiDBLite consensus disorder prediction 825 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1064 Mal-Chr6 16022306 16028737 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mal6g1064 Plus-3 6.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1064 - - aprc:113869503 1808.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1064 6 16022306 16028737 Mal6g1064 6 16022306 16028737 ECH