Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g1008 ATGGTGCTCGAGGCGACAATGATCTGTATTGACAATTCTGAATGGATGCGTAACGGTGATTATTCTCCTTCTCGATTTCAAGCTCAAGCTGATGCTGTTAATCTCATTTGCGGTGCCAAAACCCAGTCGAATCCGGAAAATACAGTGGGAGTTCTCATAATGGCAGGGAAAGGTGTTCGTGTTTTGGTCACTCCTACCAGTGATCTAGGCAAGATCTTGGCTTGCATGCATGGACTAGAAATAGGCGGTGAGATGAACCTAGCTGCTGGTATTCAGGTGGCACAATTGGCTCTTAAGCATCGTCAAAATAAAAATCAACAGCAAAGGATTATTGTCTTTGCTGGAAGTCATGTTAAGCATGAAAAGAAAATGTTGGAGATGATAGGGAGAAAGTTGAAAAAGAATAGTGTAGCGCTTGATGTTGTTAATTTTGGTGAAGAAGATGAGGCGAAGACAGAAAAGTTGGAATCACTTGTTGCAGCTGTGAACAATAATGATACGAGCCATATCGTTCATGTTCCAGCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGTACGCCAATTTTCACTGGCGATGGGGAAGGTGGAAGTGGTTTTGCTGCTGCTGCAGCGGCAGCTGCAGCTGGGGGTGCATCTGGATATGATTTTGGTGTGGATCCAAACTTGGATCCTGAATTGGCTCTTGCCTTAAGAGTTTCAATGGAAGAGGAAAGAGCCAGGCAGGAAGCTGCAGCGAAAAAGGCTGCAGAGGATGCGGCCAAACAAGAGAAAGGAGGTGAGCAGCAAGCTAGCTCACAAGATGCGACAATGACCGAGCGTGCCAGTGCATCAACTTCTGAAGCAGAGAATAAGACAACTGATTTGATGGATGATGAGAATGCCCTACTGCAGCAGGCGCTTGCAATGTCAATGGATGATCCTGCGGTTGGCCATGATGTAAGAGATACAGATATGACGGAAGCATCTGCCGATGACCCTGAGCTGGCACTAGCTCTCCAATTGTCAGTAGCGGATAGTACAAAGGATCAAGCAAGCCAGTCAGACGTGACTAGATTGTTGGCAGATCAATCCCGTGTATCTGATATTCTTGCGTCGCTTCCTGGGGTCGACATAAATGACCCTTCCATCAGAGATTTGCTGGCATCCATTCCAAATCAATCTGAGCAACAGAAGAATGACGACAAGCCATCAAATGAGGAGAAGAAATAA 1212 0.4563 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLIMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKNQQQRIIVFAGSHVKHEKKMLEMIGRKLKKNSVALDVVNFGEEDEAKTEKLESLVAAVNNNDTSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGASGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGGEQQASSQDATMTERASASTSEAENKTTDLMDDENALLQQALAMSMDDPAVGHDVRDTDMTEASADDPELALALQLSVADSTKDQASQSDVTRLLADQSRVSDILASLPGVDINDPSIRDLLASIPNQSEQQKNDDKPSNEEKK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g1008 403 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Mal6g1008 403 SMART VWA_4 2 175 IPR002035 -
Mal6g1008 403 SUPERFAMILY vWA-like 4 175 IPR036465 -
Mal6g1008 403 MobiDBLite consensus disorder prediction 242 288 - -
Mal6g1008 403 Pfam Ubiquitin interaction motif 325 339 IPR003903 -
Mal6g1008 403 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Mal6g1008 403 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Mal6g1008 403 MobiDBLite consensus disorder prediction 242 258 - -
Mal6g1008 403 MobiDBLite consensus disorder prediction 368 403 - -
Mal6g1008 403 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Mal6g1008 403 Coils Coil 232 257 - -
Mal6g1008 403 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Mal6g1008 403 SMART uim 324 343 IPR003903 -
Mal6g1008 403 SMART uim 222 241 IPR003903 -
Mal6g1008 403 SMART uim 292 311 IPR003903 -
Mal6g1008 403 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Mal6g1008 403 CDD VWA_26S_proteasome_subunit 1 188 - -
Mal6g1008 403 MobiDBLite consensus disorder prediction 259 284 - -
Mal6g1008 403 Gene3D - 220 306 - -
Mal6g1008 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 403 - -
Mal6g1008 403 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g1008 Mal-Chr6 15063757 15069318 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g1008 K03029 - gmx:100814594 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1008 6 15063757 15069318 Mal6g1008 6 15063757 15069318 ECH
Mal6g1008 6 15063757 15069318 Mal5g3315 5 96600817 96606224 PCT