Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0903 ATGCCTCACAGAAATGTTGTCACTTGGACAACCTTAATTTCCTCGCATCTCAAAAATGGGTCTGTCCCAAAAGCATTTGAGATGTTCAATCAAATGCGTGTGTTGGATGAGAGACCGAATGAGTACACTTTCGCTGTTCTGCTTCGAGCTTGTGCCAATCGTGATTTTTCGAGTGTTGGTTTGCAGATTCATGGATTGCTTGTTCGATGTGGGCTTGAGAGAGATAAATTTTCTGGGAGCTCTCTTGTGTATATGTATTTTAAAGGTGGTAATGATTTAAGGGACGCGCTACGTGTTTTTTATGGATTGTTGGAGAGAGATGTTGTTGCTTGGAATGTTATGATTTCTGGGTTTGCTCAAGTTCGTGACTTTTGCATGGTGCAAAGGTTGTTTTCTGAAATGTGGGAAGTACAAGGGTTGAAACCTGATAGTAACACCTTTGTTAGTTTACTCAAGTGTTGTTCTTTGTTGCAAGAGGTAATGCAAATTCATGGGATTGTGTATAAGTTTGGTGCTGAAGTTGATGTTGTGGTTGAGAGTACTATGGTTGACTTGTATGCCAAATGTGGGGATGTGAGTTCTTGTAGGAAAATCTTTGATTCCATGGAGAAGAAGGATAATTTTGTTTGGAGTTCCATGATTTCAGGTTATACGATGAATAATAGAGGACAGGAAGCTGTGAAGTTTTTCAAGGATATGCGTAGACAAACGGTGAAACTGGATCAGCATGTGTTATCTAGTACTCTGAAAGCTTGTGTTGAAATAGAGGACTTGAACACTGGTGTTCAAGTACATGGTTTAATGATAAAAAACGGGCATCAGAGTGATTGTTTTGTAGCAAGTGTGTTGTTGAATCTCTATGCTAGTTTTGGTGAACTAGGAGATGTGGAAAAGTTATTTAGAAGGATTGATGATAAAGATATTGTAGCATGGAACTCTATGATCTTGGCTCGAGCTCAGCCGGGTCAGGGATCTGATCGTTGTATGCAATTATTGCAAGAGCTCCGTCGAACAACCATTTTGCAAATTGAAGGTGCCACTCTGGTTGCTGTTTTGAAGTCTTGTGAGAATGAATCAGATTTACCTGCAGGTAAACAAATTCATTCACTTATAGTGAAATCAAGTATGTGTCATCGTACTTTGGTTGGCAATGCATTAGTCCACATGTACTCTGAGTGTAGACAAATTGATGATGCATTTAAAGCTTTTGTTGACATTGTAAGGAAAGATGATAGTTCATGGAGTTCTATTATTGGAACTTACAAACAAAATGGAATGGAATCCGAGGCTTTAGAGCTATGCAAAGAGATGTTGGATAAAGGAATCAGTTTTACAAGTTATAGCCTTTCACTATGTATTTCAGCTTGCTCACAACTTTCAGCTATATGCAAGGGTAAACAACTCCATGTTTTTGCCATCAAGTCTGGTTACAACCGCGATGTCTACGTTGGGAGTTCCATTATAGATATGTATGCTAAATGTGGGAACGTGGAGGAGTCGGAGAAAGTTTTCGATGAACAATTAGAGCCAAATGAAGTAATTTTTAATGCAATGATCTGCGGATATGCAGATCATGGAAAAGCGCAACAAGCCATAGAAGTATTAAATAAGTTAGAGAAGAATGGTGTGACCCCCAATCATGTAACTTTCTTAGCTTTGATGTCAGCTTGTAGCCATGCAGGGTATGTAGAAGAAACTTTGCATTTGTTTACATTGATGCTTGACAAATACAAGATTAAGCCAGAATCAGAGCATTATTCGTGCTTGGTTGATGCATATGGTCGGGCAGGAAGGCTAGAGGAAGCTTACCAGATAGTTCAAAAGGACGGAAGTGAATCGGCATGGAGAACATTACTCAGTGCTTGCAGGAATCATAATAACACAAAAATTGGAGAAATATCTGCAATGAAGATGATAGAATTGAATCCTAATGATCATGCTTCGTATATTCTTCTTTCAAATATTTATACTGGAGAGGGAAAATGGGAAGAAGCTGTTAAATGTATGGAGAAAATGGCGAGGATTCGAGTGAAGAAAAATCCAGGAAGTAGTTGGTTGGTTTGA 2064 0.3881 MPHRNVVTWTTLISSHLKNGSVPKAFEMFNQMRVLDERPNEYTFAVLLRACANRDFSSVGLQIHGLLVRCGLERDKFSGSSLVYMYFKGGNDLRDALRVFYGLLERDVVAWNVMISGFAQVRDFCMVQRLFSEMWEVQGLKPDSNTFVSLLKCCSLLQEVMQIHGIVYKFGAEVDVVVESTMVDLYAKCGDVSSCRKIFDSMEKKDNFVWSSMISGYTMNNRGQEAVKFFKDMRRQTVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHQSDCFVASVLLNLYASFGELGDVEKLFRRIDDKDIVAWNSMILARAQPGQGSDRCMQLLQELRRTTILQIEGATLVAVLKSCENESDLPAGKQIHSLIVKSSMCHRTLVGNALVHMYSECRQIDDAFKAFVDIVRKDDSSWSSIIGTYKQNGMESEALELCKEMLDKGISFTSYSLSLCISACSQLSAICKGKQLHVFAIKSGYNRDVYVGSSIIDMYAKCGNVEESEKVFDEQLEPNEVIFNAMICGYADHGKAQQAIEVLNKLEKNGVTPNHVTFLALMSACSHAGYVEETLHLFTLMLDKYKIKPESEHYSCLVDAYGRAGRLEEAYQIVQKDGSESAWRTLLSACRNHNNTKIGEISAMKMIELNPNDHASYILLSNIYTGEGKWEEAVKCMEKMARIRVKKNPGSSWLV* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0903 687 Gene3D Tetratricopeptide repeat domain 562 685 IPR011990 GO:0005515
Mal6g0903 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Mal6g0903 687 PANTHER OSJNBB0070J16.5 PROTEIN 196 407 - -
Mal6g0903 687 SUPERFAMILY TPR-like 385 675 IPR011990 GO:0005515
Mal6g0903 687 PANTHER OS07G0578800 PROTEIN-RELATED 396 536 IPR045215 GO:0003723|GO:0009451
Mal6g0903 687 Pfam E motif 625 686 IPR046848 -
Mal6g0903 687 PANTHER OS07G0578800 PROTEIN-RELATED 479 686 IPR045215 GO:0003723|GO:0009451
Mal6g0903 687 TIGRFAM PPR: pentatricopeptide repeat domain 209 241 IPR002885 -
Mal6g0903 687 TIGRFAM PPR: pentatricopeptide repeat domain 586 607 IPR002885 -
Mal6g0903 687 TIGRFAM PPR: pentatricopeptide repeat domain 7 41 IPR002885 -
Mal6g0903 687 TIGRFAM PPR: pentatricopeptide repeat domain 548 581 IPR002885 -
Mal6g0903 687 TIGRFAM PPR: pentatricopeptide repeat domain 513 546 IPR002885 -
Mal6g0903 687 TIGRFAM PPR: pentatricopeptide repeat domain 180 206 IPR002885 -
Mal6g0903 687 TIGRFAM PPR: pentatricopeptide repeat domain 413 443 IPR002885 -
Mal6g0903 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Mal6g0903 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Mal6g0903 687 PANTHER OS07G0578800 PROTEIN-RELATED 91 271 IPR045215 GO:0003723|GO:0009451
Mal6g0903 687 Pfam PPR repeat 485 506 IPR002885 -
Mal6g0903 687 Pfam PPR repeat 209 235 IPR002885 -
Mal6g0903 687 Pfam PPR repeat 413 442 IPR002885 -
Mal6g0903 687 Pfam PPR repeat 585 607 IPR002885 -
Mal6g0903 687 Pfam PPR repeat 180 205 IPR002885 -
Mal6g0903 687 Gene3D Tetratricopeptide repeat domain 60 161 IPR011990 GO:0005515
Mal6g0903 687 Gene3D Tetratricopeptide repeat domain 1 59 IPR011990 GO:0005515
Mal6g0903 687 Gene3D Tetratricopeptide repeat domain 330 467 IPR011990 GO:0005515
Mal6g0903 687 Gene3D Tetratricopeptide repeat domain 162 262 IPR011990 GO:0005515
Mal6g0903 687 Gene3D Tetratricopeptide repeat domain 468 561 IPR011990 GO:0005515
Mal6g0903 687 PANTHER OSJNBB0070J16.5 PROTEIN 91 271 - -
Mal6g0903 687 PANTHER OSJNBB0070J16.5 PROTEIN 1 205 - -
Mal6g0903 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Mal6g0903 687 Pfam PPR repeat family 4 53 IPR002885 -
Mal6g0903 687 Pfam PPR repeat family 106 154 IPR002885 -
Mal6g0903 687 Pfam PPR repeat family 510 558 IPR002885 -
Mal6g0903 687 PANTHER OS07G0578800 PROTEIN-RELATED 196 407 IPR045215 GO:0003723|GO:0009451
Mal6g0903 687 PANTHER OS07G0578800 PROTEIN-RELATED 1 205 IPR045215 GO:0003723|GO:0009451
Mal6g0903 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 142 IPR002885 -
Mal6g0903 687 PANTHER OSJNBB0070J16.5 PROTEIN 479 686 - -
Mal6g0903 687 PANTHER OSJNBB0070J16.5 PROTEIN 396 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0903 Mal-Chr6 13626348 13628411 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0903 12 686 Glycoside Hydrolase AT3G49170 30.970 1.23e-110 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0903 - - lja:Lj2g3v1643290.1 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0903 6 13626348 13628411 Mal6g0903 6 13626348 13628411 ECH