Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0847 ATGGAAGCCATCGTTGCTCCACCACCATCGCCGGCGCCACCCACCCGCCGCGGCAATGCAGACATCACTTCAACTATCTCTCCTTCTTCCAACCACCAACTTCACCTTCTTCGATTACCCCTCCGCCGCAACCCCAAACCCAAAAACCTCTCTCTCATTCACAATTTCCCTCATCACCACCCTTCTCCACAACCCGTTACTTCTCCGAAGAAGAATAAGAGAAGAAGAAAATGTGCCACCACTTCACACATCTTACCCTTAATGGACGCTCTTCATTTTCCCATACCCATTGACATTTACACCTCTTTGATCAAAGAATGTACTCTTTCCGGCAACCCAGAAACCGCCATTGAGTTGCATGCACACATCATAACTAGTGGCATTGAACCTCCATTGCCATTGCTCAATCGGATTCTGATTATGTTTGTTTCGTGCGGTTTATTGGAAAATGCACGCCGTGTGTTTGATGTAATGTCTGTGAGGGATTTTCATTCTTGGGCAATTTTGTTTGTTGCTTATTATGAAAATGGTGAGTATGATAATGCTATGGATGTTTTTCTCGGGATGTTATGTCGATTGGGTGTGGTGGAGTTTCCTTTTCCTCCGTGGATTTGGTCTTGTCTTCTCACGGCTTGTGCTTGTAATGTGAATGTTCCTCTAGGAATGCAAGTTCATGGATGTTTATTAAAGTTGGGTGCTTGTGACCATGTTCTTATTAGTAGCTCTTTGATCAGATTTTACGGGAGGTTCAAGTGTTTAGAAGATGCAAACGTTGTTTTTAATCGAGTGTCGCGGCATAACACATTGACTTGGACTGCGAAAATTGTTAGTGGTTGTAGAGAAAGGCGTTTCTCTGAGGCTCTTGGTGATTTCAAGGAGATGGGACGGGTAGGGATAAAGAAGGACAGTTTTACATTTTCTAGTGTTCTCAAGGCTTGTGGAAGGATGTGGAATCATGGATGCTGCGGTGAACAGGTTCATGCGGATTCCATCAAACTTGGACTCGACTCAGATAGCTACGTGCAGTGTAGTTTGATAGCCATGTATGGAAGAAGTGGATTACTAAGAGATGCAGAACTGGTATTTGAAACGACACGAAATGAAAGAAATATCGATAGTTGGAATGCCATGCTTATGGGTTACATACAAAATGGTCTGTACATTGAAGCTGTTAAGTTTGTGTATCAGATGAAGGCAGTTGGAGTGCAGCCACATGAACCATTGCTTGAAAAACTAAGAATAGCTTGTGGCAGTTCTAACTTTTCAAGCATGAACTAA 1278 0.4327 MEAIVAPPPSPAPPTRRGNADITSTISPSSNHQLHLLRLPLRRNPKPKNLSLIHNFPHHHPSPQPVTSPKKNKRRRKCATTSHILPLMDALHFPIPIDIYTSLIKECTLSGNPETAIELHAHIITSGIEPPLPLLNRILIMFVSCGLLENARRVFDVMSVRDFHSWAILFVAYYENGEYDNAMDVFLGMLCRLGVVEFPFPPWIWSCLLTACACNVNVPLGMQVHGCLLKLGACDHVLISSSLIRFYGRFKCLEDANVVFNRVSRHNTLTWTAKIVSGCRERRFSEALGDFKEMGRVGIKKDSFTFSSVLKACGRMWNHGCCGEQVHADSIKLGLDSDSYVQCSLIAMYGRSGLLRDAELVFETTRNERNIDSWNAMLMGYIQNGLYIEAVKFVYQMKAVGVQPHEPLLEKLRIACGSSNFSSMN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0847 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Mal6g0847 425 PANTHER OS07G0578800 PROTEIN-RELATED 70 419 IPR045215 GO:0003723|GO:0009451
Mal6g0847 425 MobiDBLite consensus disorder prediction 1 30 - -
Mal6g0847 425 Gene3D Tetratricopeptide repeat domain 74 197 IPR011990 GO:0005515
Mal6g0847 425 MobiDBLite consensus disorder prediction 48 74 - -
Mal6g0847 425 MobiDBLite consensus disorder prediction 1 15 - -
Mal6g0847 425 PANTHER PPR REPEAT PROTEIN 70 419 - -
Mal6g0847 425 Pfam PPR repeat 99 128 IPR002885 -
Mal6g0847 425 Pfam PPR repeat 344 363 IPR002885 -
Mal6g0847 425 Pfam PPR repeat 373 401 IPR002885 -
Mal6g0847 425 Pfam PPR repeat 165 190 IPR002885 -
Mal6g0847 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mal6g0847 425 TIGRFAM PPR: pentatricopeptide repeat domain 373 404 IPR002885 -
Mal6g0847 425 Gene3D Tetratricopeptide repeat domain 323 420 IPR011990 GO:0005515
Mal6g0847 425 Gene3D Tetratricopeptide repeat domain 205 320 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0847 Mal-Chr6 12696327 12697604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0847 294 421 Glycoside Hydrolase AT3G49170 38.168 3.17e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0847 - K08726 gmx:100778405 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0847 6 12696327 12697604 Mal6g0847 6 12696327 12697604 ECH