Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0829 ATGGCACCAGCTAGGGTTTTCGGAGCATTTGCCGGCAGAATGCTAATGTCGTCTGCGGCGAAGGGAGCGACGAAGAAGGCGGCCGCATCCGGCGGAGCTGCATCCACAACCGTCGCGAAGAAAACCGTCGTGAAGAAAACAGTGACCAGCAAGAGTACCGGAGGGATACAGAAGGTAGTTCCGGTCACTTCTGAGCTTGGTAACTTCATCGGTTCGCCTGAAGTTTCTAGAACTGAAGCTGTTAAGAAAGTTTGGGAGTACATCAAGCTGCAGAATCTTCAGAATCCTAATAACAAGAAGGAGATCTTTTGTGATGACAAGCTGAAGACCATTTTCGATGGGAAAGATAAAGTGGTGTTCACTGAGATTGCCAGATTGCTTGCTAACCATTTCGTGAAATCAACCTGA 408 0.4828 MAPARVFGAFAGRMLMSSAAKGATKKAAASGGAASTTVAKKTVVKKTVTSKSTGGIQKVVPVTSELGNFIGSPEVSRTEAVKKVWEYIKLQNLQNPNNKKEIFCDDKLKTIFDGKDKVVFTEIARLLANHFVKST* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0829 135 Pfam SWIB/MDM2 domain 60 131 IPR003121 -
Mal6g0829 135 CDD SWIB-MDM2_like 60 131 - -
Mal6g0829 135 ProSiteProfiles SWIB/MDM2 domain profile. 55 133 IPR003121 -
Mal6g0829 135 PANTHER PROTEIN TRI1 4 134 - -
Mal6g0829 135 Gene3D SWIB/MDM2 domain 49 135 IPR036885 -
Mal6g0829 135 SUPERFAMILY SWIB/MDM2 domain 50 133 IPR036885 -
Mal6g0829 135 SMART swib_2 56 135 IPR019835 -
Mal6g0829 135 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 4 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0829 Mal-Chr6 12507060 12508546 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mal6g0829 SWIB 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0829 - - gmx:100779127 155.606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0829 6 12507060 12508546 Mal6g0829 6 12507060 12508546 ECH