Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0824 ATGCTGTTATTAACATGTATGCTAAACTTTTCGGATTCTGAGTGTCTATTTGAAGAGATGGAATATAAAGATGTTGTTTCATGGAACTCGATAATGAGAGGATGTCTTTACAACGGTGATCATGAGATATCGTTGTGTTACTTCAGAAGGATGAGAGTCTGCCCTGAATTTTTCAGAAGAAACAGCAGATCATGTCAGTTTTGTGCTATTTCGGCGTGTTCGAGTTTGGGAGAATTGGTTTTTGGAGAATGCATTCATGGTCAAGGAATCAAGCTAGGATACAAGGATAGCTCTTTTGTTTCGGTTGCGAACTCTCTCATTTCATTATATTCACAATGTGAAGCCGTCGAGGTTGCCGAGACTGTATTCAGAGAAATGGCATACAAAGATATTGTTTCTTGGAATGCAATGATGGAAGGATATGTTTCAAATGAAAACGTTCATCAAGATCTTTCGAACCTAACATTAACTACCATACTTCCACTTTGTACGGAACTAATGCTCTCAGGAGAAGGAAAAACTATCCATGGATCTGCAATTAGAAGACACATGTTATCTGATTATCTTCCTTTGCCGAACGGCCCTATAGACATGTACTCGAAGGGCAACCTTGTCAAGAAAGCCGAGCTCTTGTTCAATTCTACAAAAGAGAGAGACTTAGTCTCATGGAATTTAGTGATTTCTGGTTATTCCTTGCACAAGTATTCTGAAAAGGCTCAAAATTTGTTCATAGAACTTCTATGTTGCGGTCAAAATTGCAGCTCATCAACTGTTTTCGCCATTCTATCTTCCTGCAAATCTCCAAATAGTCTCAACTTTGGAAAATCGGTTCACAGCTGGCAATTAAAGTCCGGTTTTCTGAACCACACTCTCTTGGTAAATTCTCTCATGCAAATGTATATTAACTGTGGAGACCTAACTTCAGGTTTCTCAATTTTGCAAAAGTACTCTTCTATAGCAGATATTGCTTCATGGAACACTATAATTGTAGGTTGTGTAAGAAGTGACCAAGTTCATGGTTACATATTCAGGTATGGATATCAAGAAAATTCTTTCATATCAGCTTCTTCTTGGAACTCAATGATTGCTGCATATGGTAATCATGGAAATGGTGAGAAAGCAATCAAACTATTCCATGAGATGTGTGAGTTAGGAATTAAAGTGACCAAAAGCACATTTGTTAGCCTTTTATCTGCATGCAGCCATTCAGGACTTCATCATGTATATATATCAATGTCAAATTTGTATGTTGCAGCAGGAAGTTGGAAAGATGCTACTGAGTTGAGATCTATAATAAATGACAAAGGATTAAGAAAATGTGCAGGTTATAGTCTTATTGAGGTTGGTTTTGGATAG 1356 0.3739 MLLLTCMLNFSDSECLFEEMEYKDVVSWNSIMRGCLYNGDHEISLCYFRRMRVCPEFFRRNSRSCQFCAISACSSLGELVFGECIHGQGIKLGYKDSSFVSVANSLISLYSQCEAVEVAETVFREMAYKDIVSWNAMMEGYVSNENVHQDLSNLTLTTILPLCTELMLSGEGKTIHGSAIRRHMLSDYLPLPNGPIDMYSKGNLVKKAELLFNSTKERDLVSWNLVISGYSLHKYSEKAQNLFIELLCCGQNCSSSTVFAILSSCKSPNSLNFGKSVHSWQLKSGFLNHTLLVNSLMQMYINCGDLTSGFSILQKYSSIADIASWNTIIVGCVRSDQVHGYIFRYGYQENSFISASSWNSMIAAYGNHGNGEKAIKLFHEMCELGIKVTKSTFVSLLSACSHSGLHHVYISMSNLYVAAGSWKDATELRSIINDKGLRKCAGYSLIEVGFG* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0824 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Mal6g0824 451 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 354 406 - -
Mal6g0824 451 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 243 - -
Mal6g0824 451 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 337 - -
Mal6g0824 451 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 243 - -
Mal6g0824 451 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 354 406 - -
Mal6g0824 451 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 337 - -
Mal6g0824 451 Pfam PPR repeat 26 52 IPR002885 -
Mal6g0824 451 Pfam PPR repeat 104 128 IPR002885 -
Mal6g0824 451 Pfam PPR repeat 221 250 IPR002885 -
Mal6g0824 451 Pfam PPR repeat 132 147 IPR002885 -
Mal6g0824 451 Pfam PPR repeat family 356 401 IPR002885 -
Mal6g0824 451 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Mal6g0824 451 Gene3D Tetratricopeptide repeat domain 53 164 IPR011990 GO:0005515
Mal6g0824 451 Gene3D Tetratricopeptide repeat domain 193 275 IPR011990 GO:0005515
Mal6g0824 451 Gene3D Tetratricopeptide repeat domain 276 407 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0824 Mal-Chr6 12461047 12462781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0824 11 449 Glycoside Hydrolase AT3G49170 25.647 3.17e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0824 - - mtr:MTR_5g025580 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0824 6 12461047 12462781 Mal6g0824 6 12461047 12462781 ECH