Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0695 ATGGCCAAAAAGAAACTGAAGGAACCACAACAAACCCCTCAAAACGACACCGTTTCACCCCCTTCAAGCATTTTCAACACCCTCTTCGGCAACGCACCGGAACAAATCACCACCACCGCCGCCTCTCTATTTTCCGATGATAACCCCTATAAGAGAAAGCCTTCCGATGCAACCAATCAAACTCCAAACCCCGAAAACGGCGTCGTCGATGAAAAGAAGAGGAAGAGGAACAAAGAGAAAAGTGCTGTGATTGATTCAAATCTCACAATTGAAGTTTCAGAGAAGAAGAAAAAGAAGAAAAGTGGTTCCGGCGAAGGTGAAGAAAAAGAAAAAGAGGTTAATTTGGATGGAGAAGGGGATGGTGATAAGAAGAAGAAGAAGAAGAAGAAGAGGAAAAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTGAAGGAGGAGATAAAGGTGAAAACGTTGAGAAAGTTGGGAATAAGAGAAAAGTGCGTGATAATCCAGCAGAGATGATGGTTACAAAAGAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTTAAGGTTAAAAAGAAGACTTTGTTGAAGGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTTAGGATTCGATCTGTTCCTTTACAAGATACTAAAAAACCTAGAAAGGGAGCCATCCTTGCGAAGAAAATCAATGAATCAGCTGAAAGTGTCAATGCTTACATCGTTTTCAAAACCGAGGAATCTGCTCAGGAGTCATTGTCCCACAACATGACTGTGGTTGATGGAAATCACATCCGTGTTGATAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGATAGTGCTCTGCTTTATGATAATAAGAGAACTGTTTTCGTGGGCAATCTCCCGTTTGATGTGAAGGATGAAGAACTGTATCAGCTATTTTGTGGTATACACAATCTAGAATCAAGTATAGAAGCTATTAGAGTTGTTCGAGATCCTCATCTTAATGTCGGAAAGGGAATTGCTTATGTGCTATTTAAAACAAGGGAAGCTGCCCTTTCCGTTGTTAGGACACGCTCCTTGAAGCTCCGAGATCGAGAATTGAGACTCAGTATTGCCAAAGCAGATGCTAGTGCTACCCCATCTAAAAGGCCCTACTCTCCAGCGGCACGACTCAGTCATGGCAAACCAGATGCTACCCCATCTAAAAAACCACACTCTTCAGCAGCACAAGCTCGAAGTACCCCTGTAAAGAAGTTTTCAGCGGCTTCAAAGTCTCCTTCAAGCAGTAAAAACGGGTCAAACAGGAAAGCTTCTGCATCTTATCAGGGTCTGCGTGCTACCAAATCTGATGTCCCCAAGAAAAGTCACGGTGGAGAGAAACCAAAAGAGCGCTCAAAGAAAAGACCAACGGTAGCTGCCAGAAAGGCTAAAGCAAAGATGCAGAAGGAGGGTGGTACACCGAAACAAGCAGGGTCAAAACGCAAGTTTGATAGTCGTACCCCTGATAGTCGTACTCCTGATAGCTCCAAACGAGTTAAGAAAGCCCAAAAGAAGAGGCACGTATAG 1584 0.4343 MAKKKLKEPQQTPQNDTVSPPSSIFNTLFGNAPEQITTTAASLFSDDNPYKRKPSDATNQTPNPENGVVDEKKRKRNKEKSAVIDSNLTIEVSEKKKKKKSGSGEGEEKEKEVNLDGEGDGDKKKKKKKKRKRDEVEKEWEEKKYGIVEGGDKGENVEKVGNKRKVRDNPAEMMVTKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPLQDTKKPRKGAILAKKINESAESVNAYIVFKTEESAQESLSHNMTVVDGNHIRVDRACPPRKKLKGDSALLYDNKRTVFVGNLPFDVKDEELYQLFCGIHNLESSIEAIRVVRDPHLNVGKGIAYVLFKTREAALSVVRTRSLKLRDRELRLSIAKADASATPSKRPYSPAARLSHGKPDATPSKKPHSSAAQARSTPVKKFSAASKSPSSSKNGSNRKASASYQGLRATKSDVPKKSHGGEKPKERSKKRPTVAARKAKAKMQKEGGTPKQAGSKRKFDSRTPDSRTPDSSKRVKKAQKKRHV* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0695 527 SUPERFAMILY RNA-binding domain, RBD 181 288 IPR035979 GO:0003676
Mal6g0695 527 CDD RRM1_RBM34 188 278 IPR034220 -
Mal6g0695 527 Gene3D - 295 388 IPR012677 -
Mal6g0695 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 520 - -
Mal6g0695 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 282 IPR000504 GO:0003723
Mal6g0695 527 CDD RRM2_RBM34 300 376 IPR034221 -
Mal6g0695 527 MobiDBLite consensus disorder prediction 482 516 - -
Mal6g0695 527 MobiDBLite consensus disorder prediction 455 472 - -
Mal6g0695 527 MobiDBLite consensus disorder prediction 11 45 - -
Mal6g0695 527 MobiDBLite consensus disorder prediction 90 123 - -
Mal6g0695 527 MobiDBLite consensus disorder prediction 1 137 - -
Mal6g0695 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 380 IPR000504 GO:0003723
Mal6g0695 527 SUPERFAMILY RNA-binding domain, RBD 295 397 IPR035979 GO:0003676
Mal6g0695 527 MobiDBLite consensus disorder prediction 409 451 - -
Mal6g0695 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 232 IPR000504 GO:0003723
Mal6g0695 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 373 IPR000504 GO:0003723
Mal6g0695 527 Gene3D - 184 287 IPR012677 -
Mal6g0695 527 MobiDBLite consensus disorder prediction 67 82 - -
Mal6g0695 527 MobiDBLite consensus disorder prediction 380 527 - -
Mal6g0695 527 PANTHER RNA-BINDING PROTEIN 34 45 520 - -
Mal6g0695 527 SMART rrm1_1 300 376 IPR000504 GO:0003723
Mal6g0695 527 SMART rrm1_1 189 278 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0695 Mal-Chr6 9998002 10002933 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0695 K14837 - gmx:100809622 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0695 6 9998002 10002933 Mal6g0695 6 9998002 10002933 ECH