Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0159 ATGGACAATGAAGACCTCGCTACAGAGCACAAAGTGCCAAATGCTCTCATAAAAGCGATAAAGTTTGATGTTTTAACTGGAGAAGATATAGAGAAGATCGCTGCCTTGGAGATAAATGCACCCGGACAGGTCACTTGTCCTGATTTGGGACTTCCAAATTCGTCTTATGGGTGCACAACATGTGGTTCAACAGATAGAAAGTCCTGTGAAGGTCATTTTGGAGCAATAAAATTTCCTTTTACCATATTACATCCATACTTCATGGCAGAGATTGCAGAAATCTTGCAAAAGATTTGCCCTGCATGTAAATCTATTCGACATGAATTACGGATGAAGCGTGCTAAATCTCTCCTTGGGATGAATCAGCAGCCCAGAGGTTGCAAATATTGTTGTGGAAATGGTATGGGTCGTTATCCTGCCATGAAATTCAGAGTTTCATCCAATGATTTCTTCAGGAGAACTGCAATTATTGTTGAAGTAAATGATATATCTTTAAATAAGAAAAGAAATTTGGGGCGAGGATTGCCTGCTGATTATTGGGATTTTATCCTTGGAGATGCTCAACAAGAAAGTCATGTAAATAGAAGGGTTTTATCACCTGTTCAGGTTGAAAATTTATTGAGTGGTGTTGATCCGAACTTCATTGAAAAGTTTATTCCAAGCATGGATTTGGTTGGTCTCAGTTGCTTCCTGGTGGCACCGAATTGTCATCGTGTGACAGAAGTCCCTCATCGACTTTCCGGGGGATATCCATTGAGTTTCGATAACAGGACCAGGGCTTGCAAGAAATTGGTTGATTTCAGGGGTACAGCAAATGAATTAAGTTCTCGTGTTTTAGATTGCCTGAGGTTTTCCAAGATAAATCCTGATAGAACACCAATCAATATTTTTACTGAGTTGCAACAAAGAAGGGTGGGAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATGAAAGACGTCGTTCTTGGAAAACGCAATGACAGTACATTCCGTACCGTGGTTGTTGGTGATCCAGACCTTGAGCTTAGTGAAATTGGTATACCTTGTCAAATTGCAGAAGGTTTGCAGGTTTCTGAGTGCGTGAATAGGCAGAATAGGCAAAATTTGCTTTTTTGTTGTGAGCTGCGTTTGTTAGAGAAGGGACAGATAAATGTTTACAGAAAGGGTAATCATGTTGTTCTGTATAAAAAAGAAGATTTGAAGATAGGAGACGTATTTTATCGACCTCTTGTTGATGGAGACAAAGTGTTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCTCTCACGGTTAGGGTTCTTCCAATATCTTCTGTAGTATCTATTAACCCAATATGTTGTTCACCTCTGCGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCTGTTGGTGCAAGAGTGGAACTGAATGAGCTGGTTGCTTTGGATAGGCAACTGATTAATGGGCAAAGTGGTGGAAATCTGCTTTCACTTTCTCAGGATAGCTTAACTGCTGCATATTTGTTGTTGGAAGGTGGGGTCTGTTTGAATGTTTACCAAATACAGCAGCTTCAAATGCTCTGCAATACAAAAGAATTACCACCTGCTGCTGCAATTGTAAAATCTCCTTCAAGTAATTCCTTGTTTTGGAGTGGCAAGCAAATGTTCAGCATGCTCTTGCCTTCTAAGTTTGACTATACTTTTCCTTCAAATGATGTTTTTGTTAGGGACGGGGAGCTGATGTCTAGTTCTGAGGCTTCTGGGTGGTTACGCGATTCAGAGAACAATGTTTTCCAAAGTCTTGTTGAACATTTTCAAGGGAAGACTTTGGACATTTTGCATGGAGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACAGGGTTTAGTGTTTCCCTCTCAGATTTGTACCTTTCTTCTGATTCCTATGCGCGGAAAAACATGATGGAGGAAATCTCCTATGGTTTACGAGAAGCAGAACAGGCTTGTGATTTCAATCAGTTATTGGTAGATTATTACTGTGATTTGCTTTCAGGAACTCTAGAAGATAATGACAAGTTTATGACTGTTGATGTGGATCGTCTGAATTATGAAAGGCAAATATCTGCTGCTCTAAGTCAATCGTCAGTTGATGCTTTTAGACAAGTTTTTCGCAATATTCAAAGTTTGGCTGATAAATATGCGCGCAAGGACAATACTTTCCTTGCTATGTTTAAGGCTGGAAGCAAGGGCAATTTATTGAAATTAGTGCAACATTCCATGTGCCTTGGTCTGCAACATTCTCTGGTGCGCTTGTCATACAGAATTCCTCGTGAACTCACTTGTGCTGGTTGGAACAGTCAAAAGGGGCTTCATTCAACGAAGATGTTTTCTGATACTCTTGAACAAGGCCAGTCTTATATTGCTCATGCTGTGGTTGAGAGCTCTTTTCTTACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGGACATTGACCCGTAGACTTATGTTCTTTATGCGTGATCTGTATGATGCATACGATGGAACAGTGAGAAATTTATACGGTAATCAACTTATTCAGTTTTCTTATGATGCTGAAGAAGATTCATCTTGTGATAGCTATTTTCGAGAGGATATTATAGGCGGTGAACCAGTCGGAGCTCTTTCTGCTTGTGCGGTTTCTGAGGCTGCATACAGTGCTTTGAGTCAACCTATTAGTCTTCTTGAAGCGTCACCTTTGCTGAATTTAAAAAATGTTCTTGAGTGTGGCTCAAGGAAAAAAGGTGGTGATCAGACCGTGTCTTTATTTTTGTCTGAGAAAATTGGTAAACAGAGAAATGGGTCTGAATATGCAGCACTAGAAGTTAAGAATTATTTGGAAAGATTGATGTTCTCAAACATTGTTTCTACTGTCATGATAATTTTCACCCCACAGTCTTGCAATCTAGAAAAATACAGTCCTTGGGTTTGCCATTTTCATTTATACAAGGAAAATGTAACAAGAAGCAATTTAGAAGTGCATTCTATCATTGACTCTCTTTACCAGCGATATGACTCCTTAAGAAAAGATTCAAAAGTCATTTTTCCCAATTTGAAAATATCAAGCAAGAAATGTTGTGAAGACTACATGGCCAAGGAAGGTGGAGAAACCTCTGTTGATAAGGGAAAGGACGGTGAAGATTGCATCACCATCACAATTGTCGAAGACTCTAAGAATTCCTTACAACTGGATGCTGTTCGGGATATGATGATACCTTTCCTTCTGGGAACAGCTATAAAAGGATTTTTGGAGATCAAGAAGGTTGACATTCTCTGGAAGGATCTGCCAAAAGTAGCGAATTCTTATAATAATTCTTCTGGTGAACTATATTTGAGGGTTACTATGTCCAGCGACAATGACAATGGTACATTCTGGGGTAGACTGATAAATCATTGTCACAGAATAATGCCGTTAATTGATTGGACACGAAGTCATCCCGATAACATTCATCATTTCTGCTCAGCCTTTGGAATCGATGCAGGGTGGCAGCATTATCTCCATAATTTGTCATCTGCAACTTCTGATACGGGCAAGTCAATCCTTCCTAAGCATCTGCGTCTTGTTGCCAATAGTCTTTCAGCCAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGAATGGCACGGCAAAGGAAACATGCATCTGTTTCATCACCCTTCGTGCAAGCATGCTTTTCTAATCCTGGTAGTTCCTTTTTAAAAGCTGCAAAGTCTGGAGTCGTGGATAATCTCCAGGGCAATCTAGATGCATTGGCTTGGGGAAACTGTCTGCCGATGGGGACAAGTGGACAGTTTGATATCATATACTCAGATAAGGAACAAAAGCTTGATAAGTCTGTAGATGTGTATGGCCTGCTAGAAACCAGTTTTGACCAGCTGGAGCAAGAGATTATTACCCCTCCCCCTCAATCCCGCAAATATTCATCTGGAAAATGCAATTCAGAGTTTAGGTTTAAAAAGGGTGGTTACAACCCAAAAGAGCCTAAGCAGTGGAAAAATGTTTTAAGAAACTTCATGACTGCAAATGATGTTCAGAAGCTTACTTATGAAGCAAGGGTCATACTGAACAAGTATCAGATTGATCAGATACTAAGTGAGACAGACATGTTAACAATAATGAAGGTTTTGCATTTTCATCCTTGTAGAGATGAGAAGTTTGGCTCTGGACCACAAAACATAAAGGTTGGATGGCATCCTAAGTTTACGGACAGCCGATGTTTTTTTATAATACGAAAGGATGGGACCATTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATTATTGATCCGAAAAAGTCAAAGATCCAAAGGAACAGATGGTCGGGAAATGGTCATACCGAAGCTAAAAAGTGGTCAGGAAATGATACAGAATCTAAAAAATGGTCAGAAAGATGTGACAAGGAAGCTAAGAAATGGTCACAGAGTTATGACAAGGAAGCTAAGAAATGGTCGGGAAATGATGACATAGAAGCTAAAAAATGGTCGGGAAATGATGACGTGGAAGTTACTAGCATTTGA 4599 0.3983 MDNEDLATEHKVPNALIKAIKFDVLTGEDIEKIAALEINAPGQVTCPDLGLPNSSYGCTTCGSTDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPACKSIRHELRMKRAKSLLGMNQQPRGCKYCCGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYWDFILGDAQQESHVNRRVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPINIFTELQQRRVGENACNSSGLRWMKDVVLGKRNDSTFRTVVVGDPDLELSEIGIPCQIAEGLQVSECVNRQNRQNLLFCCELRLLEKGQINVYRKGNHVVLYKKEDLKIGDVFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGGNLLSLSQDSLTAAYLLLEGGVCLNVYQIQQLQMLCNTKELPPAAAIVKSPSSNSLFWSGKQMFSMLLPSKFDYTFPSNDVFVRDGELMSSSEASGWLRDSENNVFQSLVEHFQGKTLDILHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLREAEQACDFNQLLVDYYCDLLSGTLEDNDKFMTVDVDRLNYERQISAALSQSSVDAFRQVFRNIQSLADKYARKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELTCAGWNSQKGLHSTKMFSDTLEQGQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGSEYAALEVKNYLERLMFSNIVSTVMIIFTPQSCNLEKYSPWVCHFHLYKENVTRSNLEVHSIIDSLYQRYDSLRKDSKVIFPNLKISSKKCCEDYMAKEGGETSVDKGKDGEDCITITIVEDSKNSLQLDAVRDMMIPFLLGTAIKGFLEIKKVDILWKDLPKVANSYNNSSGELYLRVTMSSDNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYLHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGVVDNLQGNLDALAWGNCLPMGTSGQFDIIYSDKEQKLDKSVDVYGLLETSFDQLEQEIITPPPQSRKYSSGKCNSEFRFKKGGYNPKEPKQWKNVLRNFMTANDVQKLTYEARVILNKYQIDQILSETDMLTIMKVLHFHPCRDEKFGSGPQNIKVGWHPKFTDSRCFFIIRKDGTIEDFSYRKCILGALDIIDPKKSKIQRNRWSGNGHTEAKKWSGNDTESKKWSERCDKEAKKWSQSYDKEAKKWSGNDDIEAKKWSGNDDVEVTSI* 1533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0159 1532 Gene3D RNA polymerase ii 357 409 - -
Mal6g0159 1532 PANTHER DNA-DIRECTED RNA POLYMERASE 6 1371 IPR045867 GO:0003899|GO:0006351
Mal6g0159 1532 Gene3D - 320 490 - -
Mal6g0159 1532 CDD RNAP_IV_RPD1_N 25 862 IPR040403 -
Mal6g0159 1532 MobiDBLite consensus disorder prediction 1477 1524 - -
Mal6g0159 1532 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 6 1371 - -
Mal6g0159 1532 Pfam Protein of unknown function (DUF3223) 1377 1448 - -
Mal6g0159 1532 Pfam RNA polymerase Rpb1, domain 3 487 637 IPR007066 GO:0003677|GO:0003899|GO:0006351
Mal6g0159 1532 Gene3D RNA polymerase II, clamp domain 7 123 IPR044893 -
Mal6g0159 1532 Gene3D - 1357 1450 - -
Mal6g0159 1532 SMART rpolaneu7 223 511 IPR006592 GO:0003677|GO:0003899|GO:0006351
Mal6g0159 1532 MobiDBLite consensus disorder prediction 1463 1532 - -
Mal6g0159 1532 Gene3D RNA polymerase Rpb1, domain 3 491 639 IPR042102 -
Mal6g0159 1532 Gene3D - 641 815 IPR038120 -
Mal6g0159 1532 Pfam RNA polymerase Rpb1, domain 4 702 763 IPR007083 GO:0003677|GO:0003899|GO:0006351
Mal6g0159 1532 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1293 - -
Mal6g0159 1532 Pfam RNA polymerase Rpb1, domain 2 324 481 IPR000722 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0159 Mal-Chr6 2274117 2286121 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0159 K16250 - gmx:100796185 2178.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0159 6 2274117 2286121 Mal6g0159 6 2274117 2286121 ECH