Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0157 ATGGCAGCAGCAGCAGCAAAGAACGTTGGAATTCTCGCTCTTGATATCTATTTCCCTCCTAATTGCGTTCAACAGGAAGCGTTAGAGGCTCATGATGGTGCGAGTAAAGGGAAATATACAATTGGACTTGGACAAGATTGCATGTCATTTTGTTCTGATGTTGAAGATGTCATCTCTATGAGTTTGACAGTGGTTTCCAACCTTCTTGAGAAGTATGAGATCGATCCTAAACAAATTGGTCGTCTGGAAGTTGGCAGCGAGACTGTGATTGACAAAAGTAAATCCATCAAGACATTCTTGATGCAGATCTTTGAGAAATATGGAAATACTGACATTGAAGGTGTTGACTCAAGTAATGCATGCTATGGAGGAACTGCCGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACCGACAGTGCAGTCTATGCAGAAGGTCCTGCTCGACCTACCGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGACGCCCCTATTTCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGTTTATGATTTTTACAAACCTGACCTTCCTAGTGAATATCCGGTTGTCGATGGAAAGCTTTCACAAACATGTTACCTCATGGCTCTTGATACCTGCTTTAAAAATTTCTGTCACAAATATGAGAAACACGAAGGAAAACAATTTTCTCTTTCTGATGCTGACTACTTTGTATTCCACTCTCCTTATAACAAGCTTGTGCAAAAAAGTTTTGCTCGTTTGGTCTTCAGCGACTTCTTGAGGAATCCCAGCTCTAAGGATGAGGTTACCAAAGAAAAGCTTGGACCTTTTGCAACTTTATCCGATGACGAAAGCTATCAAAGCCGGGATCTTGAAAAGGCATCCCAACAAGTTGCAAAGCCTCTATACGATGAGAAGGTACAACCATCTACTTTGATACCAAAGCAAGTTGGCAACATGTACACCGCGTCCATCTATGCAGCATTTGCATCCCTTATTCACAACAAAAATAGCTCATTGGAAGGTAAGAGGGTGATATTATTCTCATATGGAAGTGGCTTAACTGCCTCAATGTTTTCCTTGCAATTACGTGAAACTAAACATCCATTTAGCTTGTCAAACATTGCCCGAGTGATGGATGTTGCTGAAAAGTTGAAGTCAAGACATGAGTTCCCTCCAGAGAAGTTTATTGAAACACTGAAGCTAATGGAACATAGGTATGGTGCCAAGGATTATGTAACAAGCAAGGACAGTAGCCTTTTAGCTCCAGGCACATTCTATCTCACCGAAGTTGATACCATGTATCGTAGATTCTATGCAACAAAATCTAGCGAAAGCAATTCGACACCTGCAATCAACGGTTTGACTGTCAATGGCCACTGA 1416 0.4188 MAAAAAKNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISMSLTVVSNLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSSNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMAHVYDFYKPDLPSEYPVVDGKLSQTCYLMALDTCFKNFCHKYEKHEGKQFSLSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTKEKLGPFATLSDDESYQSRDLEKASQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLIHNKNSSLEGKRVILFSYGSGLTASMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHEFPPEKFIETLKLMEHRYGAKDYVTSKDSSLLAPGTFYLTEVDTMYRRFYATKSSESNSTPAINGLTVNGH* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0157 471 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Mal6g0157 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Mal6g0157 471 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 5 458 - -
Mal6g0157 471 CDD init_cond_enzymes 8 372 - -
Mal6g0157 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
Mal6g0157 471 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Mal6g0157 471 Gene3D - 5 455 IPR016039 GO:0016746
Mal6g0157 471 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Mal6g0157 471 SUPERFAMILY Thiolase-like 180 451 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0157 Mal-Chr6 2244670 2249540 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0157 K01641 - gmx:100782595 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0157 6 2244670 2249540 Mal6g0157 6 2244670 2249540 ECH