Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0151 ATGGCGGCAGCAGCAGCAGAAAAGACCACAGTTGTTGAGTCCACAGATTTTCCTTTGAAGAGGCAAAGAGAAGAGGAAGATGAAGATCAAGTACCGCTTAACGGTGTCTCTGTTCCAAAAGAACCTCAACCTAATGGTTTATCTTCTGTTATTCCTGGATGGTTCTCTGAAATGAGCCCAATGTGGCCTGGGGAGGCCCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGATTATCAGGATGTTATGGTCTTCCAGTCAGCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACTGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCAATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGACGGGGGAGTCCTGCGGGAAGTTTCACGCCATTCTTCAATAGAAAAGATAGAGATTTGTGAAATAGACAAGATGGTTGTCGATGTATCCAAACAATTTTTCCCTGATATAGCAGTAGGTTTTGAGGATCCACGTGTGACACTTATTATCGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATTGTGGATTCATCTGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTGAGTCAGTTGCAAGGGCTCTTCGTCCAGGAGGTGTTGTATGTACTCAGGCGGAAAGTATATGGCTTCATATGCATATCATTGAGGACATCGTAGTGAATTGTCGCCAAGTTTTCAAAGGCTCGGTCAACTATGCTTGGACCACGGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGGCCTTCGGTTGATTTCAAGCATCCAGTGAATCCTATTGATGAGAATGATAGCCAGCAGGCAGGAAGACCATTGAAATTTTACAATTCTGAGATTCATTCAGCAGCTTTCTGTTTGCCATCTTTTGCAAAGAGGGCAATTGCTTCTAAATCAAATTGA 1029 0.4334 MAAAAAEKTTVVESTDFPLKRQREEEDEDQVPLNGVSVPKEPQPNGLSSVIPGWFSEMSPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSIEKIEICEIDKMVVDVSKQFFPDIAVGFEDPRVTLIIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQQAGRPLKFYNSEIHSAAFCLPSFAKRAIASKSN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0151 342 PIRSF Spermidine_synth 43 342 IPR030668 GO:0006595
Mal6g0151 342 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 131 144 IPR030373 -
Mal6g0151 342 Hamap Polyamine aminopropyltransferase [speE]. 53 338 IPR001045 GO:0003824
Mal6g0151 342 Pfam Spermidine synthase tetramerisation domain 53 107 IPR035246 -
Mal6g0151 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 337 IPR029063 -
Mal6g0151 342 Pfam Spermine/spermidine synthase domain 110 297 - -
Mal6g0151 342 Gene3D Spermidine synthase, tetramerisation domain 46 104 IPR037163 -
Mal6g0151 342 TIGRFAM speE: spermidine synthase 54 332 IPR001045 GO:0003824
Mal6g0151 342 PANTHER SPERMIDINE/SPERMINE SYNTHASE 10 342 IPR001045 GO:0003824
Mal6g0151 342 CDD AdoMet_MTases 130 241 - -
Mal6g0151 342 MobiDBLite consensus disorder prediction 1 45 - -
Mal6g0151 342 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 52 289 IPR030374 -
Mal6g0151 342 PANTHER SPERMIDINE SYNTHASE-RELATED 10 342 - -
Mal6g0151 342 Gene3D Vaccinia Virus protein VP39 105 342 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0151 Mal-Chr6 2152376 2156831 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0151 K00797 - gmx:100792107 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0151 6 2152376 2156831 Mal6g0151 6 2152376 2156831 ECH
Mal6g0151 6 2152376 2156831 Mal5g2874 5 85698833 85704103 PCT