Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0145 ATGGCGGATTCATCTTCTTCTCCCGCAACTCTACAACCCAACCCCGAACCTTCACCTTCCAACCCAATCCCTAGCCAACCCGATCCACTTCCTCAATTATCCCAATCGCAATCGCAATCTTCAATTCCTTCATCAACCCCTCTCCCCACAAACCCTAATTCCAATCCACCCTCGCTACCTCCACCGCCTGCAGTATTATACGCTCCGCCGCAAATTCCCGGTGTTCTCCCTCCGTCTGCACCCTCCTTCCGGCCGCTTGGTGCTCAATTACCGCAGTTCACTCCTTTGCCGAATCCTCCCGGCGCTTACCAAAACCCTAATCAACCTCCTGGTGTATCCGGTGGAACAGTCCCGGTTCCGATGCCGCAGATGCAGCCGATGATGTCTTATCAAATTCCAGGGAGTAATCCTGCAATGAGGCCTTTTGCTCCGATCCCAAACGGTTATGCTATGCATCCTCAAGGAACTCTTAATCCTGCGGGAATTCCTCGTTATGCACCTCCTTATGGAACTATGGTTCGTCCTGTATATCCTCCACGCCTTCCTGGATCAATCAATGTACTTCCAGTATCACGCCCGCCTGTTGCAGGGATCCCTTCAATTCGCCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTCCTCCCAGTGTTACTCCGGCTGAGAAGCAACATACCACCGTTTACATTGGCAAGATTGCACCAACCGTGGAAAATGAGTTCATGCTTTCTCTCCTTAAATTGTGTGGGAATATCAAGAGCTGGAAAAGACCTCAGGATTTATCAAGCGGGACACCTAAAAGTTTTGGATTTTATGAGTTTGATACTGCTGAAGGGGTTCTCCGTGCTTTACGTCTCCTTACCAAATTGAATATTGATGGCCAAGAACTAATGATCAATGTAGACGAAGCTATGAGAAACTATCTGGAGCGGTATGTACAAAAAAAAACTGAGAATTCAAAGGAAAAGGAAACTCAGGCAGCAGAAGTTGAAAAAGATCAAGTTGCAAAACCTTCTGATGTAAACGAGGATGCAAAGCCTGATCTGGAGCACTCAAATAAGGAGGATAATGATTCAGCGAACAAGAAATCCCATGATGTGGCAACTTTTGGGATTGTTACAGATGAAGATAGGGAAGTTGATCGAGATGCTTTAGAAAAAATCAAGCAGATGATAGAGGAGAGGTTGAAGTCAAGACCTTTACCTCCACCGCCTCCACCGCCAACCGGTGATGGTTCTGTGAATTCAACTTCCGAACAACCTACTAAAACAAGAGATGGAGACACTGATGTTGATACAAAGAAGAATGCTGAAGATAAAAATGAGAGAGAGACAAATGGCGATAACAAACCAACCAGTGAACATGATAGACCCGAAACCCCTGACAGAAGGCATGACAGGAAAAGCAGGGAGAGAGACCGAGAACGTGAAATGAAACGAGAAAAGGAAAGAGAACTTGAGAGATATGAAAGAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAAAAGCGGAGGATTGAGGAAGTTGAGCGTCAGTTTGAATTACAATTGAAGGAATGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGTCAGTATGAAAAGGAGAAGGAGAAGGACAGAGAACGCAAACGGAGAAAGGAAATACTTTATGATGAAGAGGATGATGATGGGGATTCTAGGAAGAGGTGGCGTAGAAATGCGATAGAGGAGAAGAGAAAGAAGAGGCTGCGAGAAAAGGAAGATGACCTGGCTGACAGACAAAAAGAAGAGGAGGAAATTGCTGAGGCCAAAAAGAGGACTGAGGAGGATCAACAACTGAAGCGTCAGAGAGATGCATTGAAGCTGTTGACAGAGCATATTGTAAGTGGCAGTGACGAGACTATGGCTGCCAGAGAGATTACAAATGAAATTAATATGGTTGCTGTACAAGATACTGTAGCTGATCATTGTCATGAAGGTCATATTGGTGATGGTAATGTACTTAATACTAGCCATGATGAATCAGTCATGGCATCTGTAGCAACAACTGATACTCAGTCAAGTGGAAATGCTCCTTTGAAGAAGTTGGGATTTGGTCTGGTTGGCTCTGGAAAAAGAACAACTGTCCCTTCTGTTTTCCATGAAGATGAAGACGATGATGCTCACAAGGATAAAAAATTAAGGCCTTTGGTTCCAATTGATTACTCAACAGAGGAATTGCAGGCTGTTGAACCTATTGCTTCTGGGCCAACACCACCCAATTTGGCTGCAGCTGCAGAGTTTGCAAAGCGTATATCTAATTCCAATTTCAAGGAAGAGAAGCTGGATGGAGAACGGGATAGAAGTAGGCATTCAAATGAGAAGTCTAACCACCGGGACAGGGATAGGAGTAATGAAGATGGCACTCACTACAGAGATGAACACAGGAACAAAAATTCTGATCTTGATAGGGATCGAGATCATGGGTTGGAGAAGCACAAGACTTATGATAACAGGAGGCTCTTGGATGCAAAACAGTTAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGATTGGGCAGTGTACGACAAGCACGAATTACATGAAAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGGGAAGAAGAAAACACATTGACAGACTATATTGTTTCAAGTACACAAGAACACATCAATGCAACTGAAATGCTAGCGCGTCTTCAGGTCATTTTAGATGAAGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGGCTTGCTTTGAGGTCCAAATCATGA 2826 0.4423 MADSSSSPATLQPNPEPSPSNPIPSQPDPLPQLSQSQSQSSIPSSTPLPTNPNSNPPSLPPPPAVLYAPPQIPGVLPPSAPSFRPLGAQLPQFTPLPNPPGAYQNPNQPPGVSGGTVPVPMPQMQPMMSYQIPGSNPAMRPFAPIPNGYAMHPQGTLNPAGIPRYAPPYGTMVRPVYPPRLPGSINVLPVSRPPVAGIPSIRPIIPPVVRPVVPPSVTPAEKQHTTVYIGKIAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFDTAEGVLRALRLLTKLNIDGQELMINVDEAMRNYLERYVQKKTENSKEKETQAAEVEKDQVAKPSDVNEDAKPDLEHSNKEDNDSANKKSHDVATFGIVTDEDREVDRDALEKIKQMIEERLKSRPLPPPPPPPTGDGSVNSTSEQPTKTRDGDTDVDTKKNAEDKNERETNGDNKPTSEHDRPETPDRRHDRKSRERDREREMKREKERELERYEREAERERIRKEREQKRRIEEVERQFELQLKEWEYREREKEKERQYEKEKEKDRERKRRKEILYDEEDDDGDSRKRWRRNAIEEKRKKRLREKEDDLADRQKEEEEIAEAKKRTEEDQQLKRQRDALKLLTEHIVSGSDETMAAREITNEINMVAVQDTVADHCHEGHIGDGNVLNTSHDESVMASVATTDTQSSGNAPLKKLGFGLVGSGKRTTVPSVFHEDEDDDAHKDKKLRPLVPIDYSTEELQAVEPIASGPTPPNLAAAAEFAKRISNSNFKEEKLDGERDRSRHSNEKSNHRDRDRSNEDGTHYRDEHRNKNSDLDRDRDHGLEKHKTYDNRRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHELHERMRPWISKKIKEFLGEEENTLTDYIVSSTQEHINATEMLARLQVILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0145 941 Coils Coil 524 544 - -
Mal6g0145 941 Gene3D - 217 336 IPR012677 -
Mal6g0145 941 MobiDBLite consensus disorder prediction 525 607 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 30 48 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 315 366 - -
Mal6g0145 941 SUPERFAMILY RNA-binding domain, RBD 209 302 IPR035979 GO:0003676
Mal6g0145 941 SMART rrm1_1 226 299 IPR000504 GO:0003723
Mal6g0145 941 MobiDBLite consensus disorder prediction 392 509 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 422 509 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 49 80 - -
Mal6g0145 941 Pfam PWI domain 864 927 IPR002483 GO:0006397
Mal6g0145 941 Gene3D PWI domain 820 936 - -
Mal6g0145 941 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 941 - -
Mal6g0145 941 ProSiteProfiles PWI domain profile. 844 941 IPR002483 GO:0006397
Mal6g0145 941 SMART pwi_2 857 930 IPR002483 GO:0006397
Mal6g0145 941 SUPERFAMILY PWI domain 862 929 IPR036483 GO:0006397
Mal6g0145 941 Coils Coil 568 608 - -
Mal6g0145 941 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 941 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 92 106 - -
Mal6g0145 941 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 296 IPR000504 GO:0003723
Mal6g0145 941 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 305 IPR000504 GO:0003723
Mal6g0145 941 Coils Coil 464 520 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 12 29 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 1 117 - -
Mal6g0145 941 MobiDBLite consensus disorder prediction 764 819 - -
Mal6g0145 941 CDD RRM_RBM25 225 308 IPR034268 -
Mal6g0145 941 Coils Coil 312 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0145 Mal-Chr6 2071828 2079567 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0145 K12822 - gmx:100809428 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0145 6 2071828 2079567 Mal6g0145 6 2071828 2079567 ECH