Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal6g0122 ATGCTTCTTATAGCATTTCTCATTTGGTCTTCAAACTTTGAGTGCTGCATTGCAAGAAGAGGTAAGCATTGGAGACAAACTAGAACTTTCTCATCTTCTTTGTTTAAGAAGAAAGGGAAGAGTTATAATGGAAATAGTCATAATAAAAATCATCATGGTGGAGGATCAAAATCAAAACCAAAGTCTCCACCACATAAAACCACTCCACCATTACCAAAGGCTCCTCCACCACATAAAAGTGTTCCAATATCTCCACCAATTTCTAAACCAAAATACTCTCCTTCAACTCCACCACCTAAAGCTAACAATGGTGTGCATTCAACTTTCTTCAATGTGCTAGATTATGGAGCTAAAGGTGATGGTAACACTGATGACACAAAGGCATTCCAAGCAACATGGGCAGCTACATGTAAGGTAGAGGCATCAACAATGGTAGTTCCAGCAGATTACATCTTCTACGTGGGACCTATTTCATTCTCGGGTCCATATTGTAAGCCCAATATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAACCCAAATGCTTGGAGTGGTGTAACACTACAGTGGCTGGAATTCACAAAACTAGAAGGAATTACCATTCAAGGAAATGGTGTCATTGATGGAAGAGGTTCTGTTTGGTGGCAAGATTTTCCATATGATAATCCAATAGATGATGAAGAAAAGCTTATAGTTCCTTTAAATCACACTCAGAAGCCTCCAATGCCGGTACAAAATGAGATGGGAAGAAAAATGCCAAGTAACAAGCCAACGGCACTAAGGTTTTATGGTAGCTATGGTCCAACTGTCACGGGCATAACAATTCAGAATAGTCCTCAGTGTCACCTAAAGTTTGACAATTGCAATGGGGTCCTAGTTCATGATGTGAGCATTTCATCTCCTGGTGATAGCCCTAACACTGATGGAATTCACCTTCAGAATTCCAAAGATGTGTTGATTCACAGCAGCAAGTTAGCATGTGGAGATGATTGTATTTCTATACAAACTGGATGCTCAAATGTATATGTTCACAATGTGAACTGTGGTCCAGGACATGGAATCAGCATTGGAAGTTTAGGAAAAGATAACACGAGAGCTTGTGTCTCAAACATTACTGTCAGAGATGTAAACATTCACGACTCAATGAATGGTGTTAGAATCAAAACATGGCAGGGTGGATCTGGTTCAGTACAGGGAGTATTATTCTCAAACATACAAGTTTCAGAAGTTCAACTTCCAATTGTGATTGACCAATTTTATTGTGATAAAAGAACATGCACAAATCACACATCAGCCGTATCTCTAGCAGGAATCAATTACGAAAGAATAAAGGGCACATACACAGTTAAACCAGTACATTTTGCCTGCAGTGATAGCTTGCCATGTGTTGATGTTTCTTTAACCACTATTGAGTTAAAACCAATTCAAGAAAAATATCATCTATATGATCCATTTTGCTGGCAGACTTTTGGTGAATTAAGAACTCCAACGGTACCACCAATTAGTTGTTTACAGATTGGGAAGCCATCAAACAATCGAATTCAGACGGATCATGATATATGTTGA 1572 0.3874 MLLIAFLIWSSNFECCIARRGKHWRQTRTFSSSLFKKKGKSYNGNSHNKNHHGGGSKSKPKSPPHKTTPPLPKAPPPHKSVPISPPISKPKYSPSTPPPKANNGVHSTFFNVLDYGAKGDGNTDDTKAFQATWAATCKVEASTMVVPADYIFYVGPISFSGPYCKPNIVFQLDGTIIAPTNPNAWSGVTLQWLEFTKLEGITIQGNGVIDGRGSVWWQDFPYDNPIDDEEKLIVPLNHTQKPPMPVQNEMGRKMPSNKPTALRFYGSYGPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNIHDSMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCTNHTSAVSLAGINYERIKGTYTVKPVHFACSDSLPCVDVSLTTIELKPIQEKYHLYDPFCWQTFGELRTPTVPPISCLQIGKPSNNRIQTDHDIC* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal6g0122 523 SMART pbh1 340 360 IPR006626 -
Mal6g0122 523 SMART pbh1 370 391 IPR006626 -
Mal6g0122 523 SMART pbh1 198 219 IPR006626 -
Mal6g0122 523 SMART pbh1 399 420 IPR006626 -
Mal6g0122 523 SMART pbh1 290 316 IPR006626 -
Mal6g0122 523 SMART pbh1 317 338 IPR006626 -
Mal6g0122 523 MobiDBLite consensus disorder prediction 63 97 - -
Mal6g0122 523 MobiDBLite consensus disorder prediction 35 103 - -
Mal6g0122 523 Pfam Glycosyl hydrolases family 28 256 475 IPR000743 GO:0004650|GO:0005975
Mal6g0122 523 Pfam Glycosyl hydrolases family 28 139 219 IPR000743 GO:0004650|GO:0005975
Mal6g0122 523 SUPERFAMILY Pectin lyase-like 107 521 IPR011050 -
Mal6g0122 523 MobiDBLite consensus disorder prediction 35 51 - -
Mal6g0122 523 ProSitePatterns Polygalacturonase active site. 347 360 IPR000743 GO:0004650|GO:0005975
Mal6g0122 523 PANTHER - 1 513 - -
Mal6g0122 523 Gene3D - 96 514 IPR012334 -
Mal6g0122 523 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 1 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal6g0122 Mal-Chr6 1785485 1789939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal6g0122 1 523 Glycoside Hydrolase AT1G60590 66.793 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal6g0122 - - gmx:732602 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0122 6 1785485 1789939 Mal6g0122 6 1785485 1789939 ECH