Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4395 ATGTCAAATGTTAAAGTTGATCAACTTAATCAGCTAAGAGAAATTTTCAGTCGATTCGACATGGATTCCGATGGAAGCCTAACAATGTTAGAGCTAGCGGCACTTATTCGGTCATTAGGCCTAAAGCCTTCAGGTGACGAAGTTCAAATCCTTTTAGCCAAAATGGACTCAAACGGAAACGGTTCCGTTGAGTTTGATGAATTGGTTAGAGCCATAATGCCAAACATGAATGCAGAAGTATTGGTGAATCAAGAACAACTCATAGGTGTGTTCAAGTGCTTCGATCGCGATGGAAATGGTTACATTTCAGCTGCTGAATTGGCCGGAGCAATGGCTAAAATGGGTCAGCCACTTACGTATAAAGAGCTTATTGAGATGATTAGAGAGGCTGATATGGATGGTGATGGTGTTATTAGTTTTAGTGAGTTTGCTACTATCATGGCTCGTTCTGCTTCTGATTTGTTAAGAGGGTTTGGTTATAGAAACAAAACACATTCATTTCAATTATAA 510 0.3941 MSNVKVDQLNQLREIFSRFDMDSDGSLTMLELAALIRSLGLKPSGDEVQILLAKMDSNGNGSVEFDELVRAIMPNMNAEVLVNQEQLIGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYKELIEMIREADMDGDGVISFSEFATIMARSASDLLRGFGYRNKTHSFQL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4395 169 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Mal5g4395 169 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Mal5g4395 169 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Mal5g4395 169 SUPERFAMILY EF-hand 4 149 IPR011992 -
Mal5g4395 169 Gene3D - 2 77 - -
Mal5g4395 169 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Mal5g4395 169 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Mal5g4395 169 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Mal5g4395 169 SMART efh_1 122 150 IPR002048 GO:0005509
Mal5g4395 169 SMART efh_1 47 75 IPR002048 GO:0005509
Mal5g4395 169 SMART efh_1 86 114 IPR002048 GO:0005509
Mal5g4395 169 SMART efh_1 11 39 IPR002048 GO:0005509
Mal5g4395 169 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Mal5g4395 169 CDD EFh 11 73 IPR002048 GO:0005509
Mal5g4395 169 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 155 - -
Mal5g4395 169 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Mal5g4395 169 Gene3D - 78 162 - -
Mal5g4395 169 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Mal5g4395 169 CDD EFh 86 148 IPR002048 GO:0005509
Mal5g4395 169 PANTHER CALCIUM BINDING PROTEIN 3 155 - -
Mal5g4395 169 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4395 Mal-Chr5 115331124 115331633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4395 7 153 EF-hand Containing Proteins AT1G18530 76.190 1.17e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4395 K13448 - gmx:100795885 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4395 5 115331124 115331633 Mal5g4395 5 115331124 115331633 ECH