Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4336 ATGGCAGTGCAGGAAGCAAACCCTTCTACTCCTAGTCCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCATCAATCCCCTGACTTGGTGCACAGGTTCTATCAGGAGTCGAGTCTATTGAGCAGATCAGACAGCAATGGTGTGATGACGACTGTAACAACTACAAAAGCAATCAACGAAACAATTGTTTCCCTGAACTATGAAGATTGTACTGCTGAAATAAAAACTGCAGATGCTCAGGAGTCCTATGAGAAAGGTGTGATAGTTTTAGTAACTGGGTGCTTAACTGGGAGGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTTTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAAAATGATGCCCCACAGTTAAGTTCTGCCTCAATAAATGTCACCAATGAAATTTCGGAGGCAGCACACATTCCAGAACCTGAGGAGGTGCACCCTTCTGAACATCTTGTGGAAGACCCTGCAGCCTCTGCAGAGGATGAAAACCTCAATAATGGTGCTGAGGTTTATCATCCTCAGGACTACAAGGAAGAAGGATCGGTTATTGATGTAGAGGTTGCCATACCGTCTACTGATTTAAGCGAGAATGATATTGTTACAATTCACGTTCCAACTTCTGCAGTCCAGGATGATGCACGAAAGACATCATATGCGTCAATTGTAATGAAAAGTAACACAGCATCCGGTCGTTTCTATGTTCCCAGCCGAGCTGCAAGAGTGGCATCTGCTAAATCCAATGAACAATGGCATGCTACCGCAAAATCTACTCCTGGGCCTGAAGTATTAGCGCCTAGTACTGACAGTGCACCAAGGAGTAGTGATGTTCCTGAAGAAGCTGAAGGTCATTCCATATACATTCGGAACTTGCCATTTAATGCAACAATTGAACTTCTTGAAGAGGTTTTGAAGAAATTTGGTCCTATTAAGCATGGTGGAGTCCAAGTAAGAAGTAGTAAGCATGGTTTCTGTTTTGGCTTTGTGGAATATGAGGACTTGAGTTCTGTGCAAAGTGCACTTAAGGCTTCACCTATTACTGTTGGTGAGCGACAGGCTGTTATTGAGGAAAAAATATCTAGCACACGAGTCAGCGATGGTGGAAGAGGGAGGTACCCTTCGGGAAGAGGTGGTTTCCGGGGGCGTGGGAGATTTGGTGGTGGACGAGGATATGGTAGAAACGAGTTCAGAAACCAAGGGGAGTTCTCAGGACGACCTAGGAGTTCTCACCGCACAAGTCAAAATGGAGGTGGGCGAGGTGGACGTCATGGTGTGGGGAACCATAATGTTACACCATCTACTCCAGTGTGA 1365 0.4469 MAVQEANPSTPSPQVVGNAFVEQYYHILHQSPDLVHRFYQESSLLSRSDSNGVMTTVTTTKAINETIVSLNYEDCTAEIKTADAQESYEKGVIVLVTGCLTGRDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDAPQLSSASINVTNEISEAAHIPEPEEVHPSEHLVEDPAASAEDENLNNGAEVYHPQDYKEEGSVIDVEVAIPSTDLSENDIVTIHVPTSAVQDDARKTSYASIVMKSNTASGRFYVPSRAARVASAKSNEQWHATAKSTPGPEVLAPSTDSAPRSSDVPEEAEGHSIYIRNLPFNATIELLEEVLKKFGPIKHGGVQVRSSKHGFCFGFVEYEDLSSVQSALKASPITVGERQAVIEEKISSTRVSDGGRGRYPSGRGGFRGRGRFGGGRGYGRNEFRNQGEFSGRPRSSHRTSQNGGGRGGRHGVGNHNVTPSTPV* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4336 454 CDD NTF2 12 134 IPR018222 -
Mal5g4336 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 387 IPR000504 GO:0003723
Mal5g4336 454 MobiDBLite consensus disorder prediction 263 292 - -
Mal5g4336 454 CDD RRM_SF 304 361 - -
Mal5g4336 454 SUPERFAMILY RNA-binding domain, RBD 297 410 IPR035979 GO:0003676
Mal5g4336 454 MobiDBLite consensus disorder prediction 419 434 - -
Mal5g4336 454 MobiDBLite consensus disorder prediction 263 299 - -
Mal5g4336 454 Gene3D - 5 136 - -
Mal5g4336 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Mal5g4336 454 Pfam Nuclear transport factor 2 (NTF2) domain 16 132 IPR002075 -
Mal5g4336 454 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 446 - -
Mal5g4336 454 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 446 IPR039539 -
Mal5g4336 454 MobiDBLite consensus disorder prediction 378 454 - -
Mal5g4336 454 SMART rrm1_1 303 374 IPR000504 GO:0003723
Mal5g4336 454 ProSiteProfiles Nuclear transport factor 2 domain profile. 16 132 IPR018222 -
Mal5g4336 454 SUPERFAMILY NTF2-like 12 133 IPR032710 -
Mal5g4336 454 Gene3D - 285 417 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4336 Mal-Chr5 114565789 114569455 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4336 K24983 - gmx:100801253 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4336 5 114565789 114569455 Mal5g4336 5 114565789 114569455 ECH