Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4293 ATGACTTCCTCGCCGCACCGTTCCGGCGGCGAAGGCGACGGCAAAGGTGACAAAAGACCGAGATTTTTCGACACAAAGACTAAGAACATATGTTGGACAAAGGCTGATACTGTGCCTGGCCGTCACCCAGAAAGGTGGCGTAAAGATGCCGCCGGTAACATTGTCTGCAAGCGTTTCTTCAACTGTCTTGGCTGCCTCTGCTACGAGTACGATCACATCATCCCTTATTCCAAAGCGTTGGTTCCGATTCAAGGGACGATGACGGAAAAATTCGATATTGAGAAGTTCACCGGAAAGAATGATTTCGGCCTTTGGAGGTTGAAGATGAGGGCGGTCCTGGTGCTTCAAGGTCTTGAAGATGCACTAGCTGGTGAAGCAAAATTACCCAGCACTCTTACAGAGAAGGAGAAGAAAGATATTCTTGAAAAGGCTCATAGTGCTTTGATCTCGAGTCTTGGAGATAGGGTGCTGAGAGAAGTATCAAAGGAGAAGACAGCTGCAGAAATTTGGTTGAAATTGGAGAATCTCTACATGTCGAAGTCCCCAGCAAATCGTCTTCACTTGAAGCTGAAGCTGTTCACATTCAAGATGCAAGAAGGAACAAAGATGGAGGATCACTTGGATGAATTCAACAAGGTCATTCTTGATCTTGAGAACATTGGAGTTACTGTTGATGATGAAGATCAAGCATTGTTTTTGTTAAGATCCTTACCACAGGAGTATGAAAACTTGCATGATACGCTTGTATATGGGCGTGACTCTTTAACATTAGTGGAGGTTCAATATGCTCTAATGTCAAAGGAATTGAAGAAGCAATCTGAAAGCAAGAATGACAACAATGGAGAAGGACTCATGGCAAGAGGCAAATCAGAGAAAAGAGAATTCAAGCACAAGGAGAAATCAAGATCTAAGTCCAAGTCTAGAAAATGCTTTGTATGCAAGAAGGAGGGCCATTTCAGGAAGAATTGTCCTGAGAGTAAGAAATTCAAGACAAAGGACAGAGACAATGATGAAGATTCAGGTGGTGAATCGACGGCAGATAATTGCCAAATACTTCAATCCAGAGTGAACAGATTAAAATCAGACAAATCTCAGATTGATTCGGATAAGTTGAGAGGCTACTCTTGTGATATTAATTTTACTGACAAGGAGCTTGATATAATTGAAATGGCTGTTTATGGCGATGTGATCCGGCCAGGAAATCAGTGTAAGTGCAGAACTGTTGATGAAGTGCTTGGAAAATTCAAGGCGAAAGACGACACAAATGCTTGCAAGTTGCCATAG 1284 0.4276 MTSSPHRSGGEGDGKGDKRPRFFDTKTKNICWTKADTVPGRHPERWRKDAAGNIVCKRFFNCLGCLCYEYDHIIPYSKALVPIQGTMTEKFDIEKFTGKNDFGLWRLKMRAVLVLQGLEDALAGEAKLPSTLTEKEKKDILEKAHSALISSLGDRVLREVSKEKTAAEIWLKLENLYMSKSPANRLHLKLKLFTFKMQEGTKMEDHLDEFNKVILDLENIGVTVDDEDQALFLLRSLPQEYENLHDTLVYGRDSLTLVEVQYALMSKELKKQSESKNDNNGEGLMARGKSEKREFKHKEKSRSKSKSRKCFVCKKEGHFRKNCPESKKFKTKDRDNDEDSGGESTADNCQILQSRVNRLKSDKSQIDSDKLRGYSCDINFTDKELDIIEMAVYGDVIRPGNQCKCRTVDEVLGKFKAKDDTNACKLP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4293 427 Pfam gag-polypeptide of LTR copia-type 142 273 - -
Mal5g4293 427 Gene3D - 301 366 - -
Mal5g4293 427 MobiDBLite consensus disorder prediction 326 347 - -
Mal5g4293 427 MobiDBLite consensus disorder prediction 270 303 - -
Mal5g4293 427 Pfam Zinc knuckle 308 325 IPR001878 GO:0003676|GO:0008270
Mal5g4293 427 PANTHER F6A14.21 PROTEIN 16 91 - -
Mal5g4293 427 PANTHER F6A14.21 PROTEIN 332 427 - -
Mal5g4293 427 SMART c2hcfinal6 309 325 IPR001878 GO:0003676|GO:0008270
Mal5g4293 427 PANTHER HNH ENDONUCLEASE 332 427 - -
Mal5g4293 427 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g4293 427 ProSiteProfiles Zinc finger CCHC-type profile. 308 325 IPR001878 GO:0003676|GO:0008270
Mal5g4293 427 PANTHER HNH ENDONUCLEASE 16 91 - -
Mal5g4293 427 MobiDBLite consensus disorder prediction 326 341 - -
Mal5g4293 427 SUPERFAMILY Retrovirus zinc finger-like domains 294 330 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4293 Mal-Chr5 114030820 114039740 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4293 - - sspl:121754477 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4293 5 114030820 114039740 Mal5g4293 5 114030820 114039740 ECH