Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4245 ATGAACATTATTAACAAGAGTTGCGAAGAAGCATTGGTTTCACTATTGAGCAAATGCAACACCACCCTCAAAACCACCAAACAAATCCACACCCATCTCTACATTACAGGCCTTCACACTCACCCTTTCTTCTTCGGTAAACTCCTTCTCCAATGCGCTGTATCCATCTCCGATCATGCTCTCCACTACGCTCTTCGTCTCTTCCATCACTTCCCCAACCCCGACACCTTCATGTACAACACCCTCATTCGCTCCTTCTCTCATTCCTCCACTCCTCTCACTTCCCTTCAACCCTTCATCCAATTACTTCGCCACCCCACCCTTCTTCCTGATAGTTTCTCATTCGCTTTTGCGCTTAAAGGGATTGCGAATGATGGTTGTTCGAAGAGACAAGGGATTCAGCTGCATTCTCAGGCTTTTCGTCATGGGTTTGATGATCATATATTTGTTGGAACAACTTTGATTAGTATGTATGCTGAATGTGGGTGTTATGGGTATGCGAGAAAGGTGTTTGATGAAATGTCTCAACCGAATGTTGTTGCGTGGAATGCGGTTGTTACTGCGTGTTTTAGGTGTGGGGATTTGGAGGGTGCGTGGAGGTTGTTTGAAAGGATGCCTGTTAGGAATTTGACTTCTTGGAATGTGATGCTTGCGGGTTATGTTAAAGGTGGTGAGCTTGGGTTGGCGAGAAGAGTTTTTAGTGAAATGAAGATGAGAGATGATGTTTCGTGGAGTACTATGATTGTTGGGTTTGCTCAAGGTGGTTCTTTTGATGATGCGTTTGGGTTTTTTAGGGAGTTGTTGCGGGAGGGAATTAGGCCGAGTGAGGTTAGTCTTACTGGGGTATTATCGGCTTGTGCGCAGGCTGGGGCGTTTGAGTTTGGGAAGATTTTACATGGGTTTATGGAGAAAGCTGGGTTTCTTTGTATTGTTTCAGTTAATAATGCTCTCATTGATACTTACTCTAAGTGTGGAAATGCCGATATGGCTAAGATGGTCTTTCAAAATATGTCTGCGGCGAGGTGCATTGTTTCTTGGACATCGATGATAGCAGCACTTGCAATGCATGGTCGTGGAGATGAGGCTATTAAGCTTTTTCATGAGATGGAAGAGTCTGGAGTTAGGCCGGACGGTGTCACATTCATATCTCTCCTTTATGCTTGCAGCCATAGTGGTTTGGTTGAGCAAGGTTGTGCTTTGTTTTCTAAGATGAGGAATTTGTATGGAATTGAACCTGCCATTGAGCATTACGGTTGTATGGTTGATCTGTATGGCCGAGCTGCTAGGTTGGAGAAGGCCTACGAGTTTATATGTCAGATGCCAATTTCACCTAATGCAATCATTTGGAGGACCCTCCTTGGAGCTTGTAGCATTCATGGTAATATTGAATTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAAACAACTCAGGTGATCATGTACTGCTCTCAAATGTTTATGCGGTTGCAGGGAAATGGAAGGATGTTGCTGGCATAAGAAGAACTATGATTGAACAGAGCATGAAAAAAACTCCTGGTTGGAGCATGATTGAAATTGACAAGGTCAATTATGGTTTTGTGGCAGGTGAAAAGCCTAACGAGGTTACAGAAGAGGCCCATGATAAACTAAGGGAAATAATGTTGAGGCTCAGAGAAGAAGGTTACACGCCCCAGGTAAGGAGCGTCTTGCATGATGTTGAAGAGGAAGAAAAAGAAGATTCTATGTCCAAGCACAGTGAAAAGCTTGCTGCAGCTTTTGGAATTGCAAAGTTTCCTAAAGGAAGGACTTTAAGAATAGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAGTCTATCAAGTAGAAATCGTTGTGAGAGATAGAAGTCGCTTTCACTCATTCAAAGATGGATTTTGTTCCTGCAGAGATTACTGGTGA 1950 0.4369 MNIINKSCEEALVSLLSKCNTTLKTTKQIHTHLYITGLHTHPFFFGKLLLQCAVSISDHALHYALRLFHHFPNPDTFMYNTLIRSFSHSSTPLTSLQPFIQLLRHPTLLPDSFSFAFALKGIANDGCSKRQGIQLHSQAFRHGFDDHIFVGTTLISMYAECGCYGYARKVFDEMSQPNVVAWNAVVTACFRCGDLEGAWRLFERMPVRNLTSWNVMLAGYVKGGELGLARRVFSEMKMRDDVSWSTMIVGFAQGGSFDDAFGFFRELLREGIRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNADMAKMVFQNMSAARCIVSWTSMIAALAMHGRGDEAIKLFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNLYGIEPAIEHYGCMVDLYGRAARLEKAYEFICQMPISPNAIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKTPGWSMIEIDKVNYGFVAGEKPNEVTEEAHDKLREIMLRLREEGYTPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKFPKGRTLRIVKNLRVCGDCHTVMKLISKVYQVEIVVRDRSRFHSFKDGFCSCRDYW* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4245 649 Coils Coil 536 556 - -
Mal5g4245 649 PANTHER OS01G0913400 PROTEIN-RELATED 16 590 - -
Mal5g4245 649 Gene3D Tetratricopeptide repeat domain 294 394 IPR011990 GO:0005515
Mal5g4245 649 Gene3D Tetratricopeptide repeat domain 210 293 IPR011990 GO:0005515
Mal5g4245 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Mal5g4245 649 Pfam E motif 459 521 IPR046848 -
Mal5g4245 649 Pfam PPR repeat family 177 210 IPR002885 -
Mal5g4245 649 Pfam PPR repeat family 342 389 IPR002885 -
Mal5g4245 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Mal5g4245 649 TIGRFAM PPR: pentatricopeptide repeat domain 180 209 IPR002885 -
Mal5g4245 649 TIGRFAM PPR: pentatricopeptide repeat domain 212 239 IPR002885 -
Mal5g4245 649 TIGRFAM PPR: pentatricopeptide repeat domain 315 343 IPR002885 -
Mal5g4245 649 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Mal5g4245 649 TIGRFAM PPR: pentatricopeptide repeat domain 242 276 IPR002885 -
Mal5g4245 649 Pfam PPR repeat 212 239 IPR002885 -
Mal5g4245 649 Pfam PPR repeat 315 339 IPR002885 -
Mal5g4245 649 Pfam PPR repeat 416 440 IPR002885 -
Mal5g4245 649 Pfam PPR repeat 152 175 IPR002885 -
Mal5g4245 649 Pfam PPR repeat 242 272 IPR002885 -
Mal5g4245 649 Gene3D Tetratricopeptide repeat domain 94 209 IPR011990 GO:0005515
Mal5g4245 649 Pfam DYW family of nucleic acid deaminases 557 649 IPR032867 GO:0008270
Mal5g4245 649 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Mal5g4245 649 PANTHER - 16 590 - -
Mal5g4245 649 Gene3D Tetratricopeptide repeat domain 395 620 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4245 Mal-Chr5 113419733 113421682 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4245 132 649 Glycoside Hydrolase AT3G49170 37.279 1.13e-118 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4245 - - lja:Lj4g3v1632020.2 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4245 5 113419733 113421682 Mal5g4245 5 113419733 113421682 ECH