Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4130 ATGTCATCTCCAAGCAAGAGGCGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTAGAGACGATAAATGACGGACTCACTGAATTCAATGTGGAGTTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAACTTCCTGATGCATATCCATACAAATCCCCTTCTATCGGCTTTGTGAACAAAATATACCACCCGAATGTTGATGAGTTATCTGGCTCTGTATGCTTGGACGTCATTAACCAATCATGGAGTCCAATGTTCGATCTTCTAAATGTCTTTGAAGTTTTTCTTCCACAACTCTTGCTTTATCCAAATGCTTCAGATCCTTTGAATGGCGATGCAGCATCCTTAATGATGAAGGATAAAAAGCTATATGACCAAAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAACACATTTCCAACGGTACTGCTGATGATGAGGAGAGTGATGAAGAGGACATCAGTGAAGCAGAAACTCAATCAAGTGATGATGAAATTCCTGGTCGTGCTGATCTTTAA 558 0.3943 MSSPSKRREMDVMKLMMSDYTVETINDGLTEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKEHISNGTADDEESDEEDISEAETQSSDDEIPGRADL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4130 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Mal5g4130 185 CDD UBCc 7 143 IPR000608 -
Mal5g4130 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Mal5g4130 185 SMART ubc_7 4 148 - -
Mal5g4130 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Mal5g4130 185 MobiDBLite consensus disorder prediction 150 185 - -
Mal5g4130 185 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Mal5g4130 185 MobiDBLite consensus disorder prediction 157 173 - -
Mal5g4130 185 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Mal5g4130 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Mal5g4130 185 SUPERFAMILY UBC-like 4 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4130 Mal-Chr5 111684698 111688590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4130 3 117 Miscellaneous Gene Families AT3G17000 23.577 1.37e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4130 K10576 - gmx:100527526 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4130 5 111684698 111688590 Mal5g4130 5 111684698 111688590 ECH