Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4079 ATGAAGGAAACAATAAGGTACTTAGCGGGCATTGCAGGGCCTAGTGGCTTTGGCTCAAACTCAACTGCAGAACAAGTTACACAACATTGCTCTTTATTCCTCCCTTCAATTCTAACTGCTCTCATCACTGGTGCCACTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAAAGAGGAGTGAGAGTTGTGATTGGTGCAAGGGACATGAAAAAGGCTATGAAAGTGAGAGAAAAAATCCAAGAGGAGAGTCCTAATGCTGAGGTTATTCTATTGGAGATTGATCTTAGCTCTCTTGCTTCTGTACAAAGATTTTGCTCAGAATTTTTAGCTTTAGAATTGCCCCTTAATATTCTCATAAACAATGCTGGAGTATACTCTCAGAACCTGGAATTCTCTGAAGAGAAAATTGAAATGACATTTGCTACAAACTATTTAGGACATTTTTTGTTAACAAAAATGCTACTGGAGAAAATGATAGAAACTGCAAACAAGACAGGAATTCAAGGAAGGATAATAAATGTTTCTTCAGTAATTCATAGCTGGGTGAAAAGAAATTGCTTTTGTTTCAAAGACATGCTCAGTGGCAAAAATTACAACGGGACACGTGCATATGCTCAATCAAAATTAGCCATGATTCTGCATGTTAAGGAAATGGCTAGACAGCTAAAGGCAAGGAATGCAAGATTAACTATCAATGCAGTGCATCCAGGCATTGTGAGGACAGGAATTATTAGAGCACATAAGGGCTTAATAACGGATTCCTTCTTTTTCATTGCATCAAAGCTGCTTAAAACTATTTCACAGGGTGCATCAACGACTTGTTATGTTGCTCTAAGCAGAAAAACAGAAGGGTTGAGTGGGAAATATTTTACTGATTGTAATGAAAGTAACTGCTCAAGTCTTGCAAACGACGAATCAGAAGCTAAAAAGCTATGGAATAATACAAATACTTTGCTTCACAAACGACTAAGACAAGCAGCAATTGGAAGTTCTTCTTCCCTATTTTCTAGACCCTGTATCTAG 1029 0.381 MKETIRYLAGIAGPSGFGSNSTAEQVTQHCSLFLPSILTALITGATSGIGAETARVLAKRGVRVVIGARDMKKAMKVREKIQEESPNAEVILLEIDLSSLASVQRFCSEFLALELPLNILINNAGVYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIETANKTGIQGRIINVSSVIHSWVKRNCFCFKDMLSGKNYNGTRAYAQSKLAMILHVKEMARQLKARNARLTINAVHPGIVRTGIIRAHKGLITDSFFFIASKLLKTISQGASTTCYVALSRKTEGLSGKYFTDCNESNCSSLANDESEAKKLWNNTNTLLHKRLRQAAIGSSSSLFSRPCI* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4079 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Mal5g4079 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Mal5g4079 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Mal5g4079 342 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Mal5g4079 342 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Mal5g4079 342 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Mal5g4079 342 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Mal5g4079 342 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Mal5g4079 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Mal5g4079 342 PANTHER RETINOL DEHYDROGENASE 4 328 - -
Mal5g4079 342 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 328 - -
Mal5g4079 342 Pfam short chain dehydrogenase 39 180 IPR002347 -
Mal5g4079 342 CDD retinol-DH_like_SDR_c_like 39 314 - -
Mal5g4079 342 Gene3D - 38 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4079 Mal-Chr5 111130236 111133414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4079 17 294 Acyl Lipid Metabolism Gene Families AT3G46170 25.862 4.68e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4079 - - gmx:100776567 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4079 5 111130236 111133414 Mal5g4079 5 111130236 111133414 ECH
Mal5g4079 5 111130236 111133414 Mal2g2406 2 30154555 30157097 PCT