Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4055 ATGAATCGCATGAAAGCAATAACCTCGTCCCTCAGATTGCTCAAGTCATCAACATCACTCGCTACACGAGTTCTCGCAACTCAGAACCAGGTTTCTCACTTTTCTTCTTCGTCTTTTTCACTCCCTCTCTTGAATCGATCCAAAGATTTGTTATGTTTTCACAACAATCATCAAAAACACTATTTTTCTTCAAAACCCAACTCGATTTTAGAGCGTGTTTTTGCCAATGATTGGTCTGAAGAGTTAGAGAAAGAGTTGGAAGAATGTCGTGAATCATTGACCCATGAAACTGTTGTTTATGTTTTGAAGCGATTGGATAAAAAACCAATAAAAGTTTTTAACTTTTTCAATTGGGTCAGTGAGAAAGATTGGTTTATGTCAAGTTCTTCGGTTTATAGCTTGGTTCTTAGGGTTTTAGCTAGTAATAAGAATATGAAAGAGTTTTGGATTGTTCTTAGGGCTATGAAGGAAAATGGGTTTTATTTAGATGAAGAGACACATTTGACAATTTCGACGGGTTTGAAAAAGGAGAAGATGAGTAGTAATGTTGTTGATCTTAAGCATTTCTATAAAGTGATGCTTGAGCAGAATGCAATGCATAGTGTTGTCAAAAAGGTGGTTGGTATCATTCAAGGGTCTGATTGGGATGATGATAAGGTTGAGAAAGAATTGGAGAAGGTTAAAATTCAACTTTCGGATGATTTCGTGATTAGGGTTGTGAAAGAGCTTCAAAATAGTCCTTTGAAGGCTTTTAAGTTCTTTCATTGGGTTGGGAAGCAATCTGGTTATAAGCAGAATACGGTGACTTACAATGCAGTTGCTACAGTTCTTTCTAGGATGGAGTCAATTGAGGAGTTTTGGAGTATTCTTGAGGAGATGAAGAGTGTCGGTCATGAATTGGATCTCGATACATACATAAAGATATCGAGGCAACTTGAAAAGAATAGGATGATGGAGGATGCTGTCAAGCTTTATGAGCATATGATGGATAGTTCATATAAGCCATCGGTTCTGGATTGCATTATGCTTTTAAATAGCATCTCTGCATGCGATAAGCCGGATTTGGATTTAGTTTTCAGGGTAGCTGAGAAATTCGAGTCAACAGGGTATACTCTTTCCAAGGCAGTCTATGATGGTATCCACAGGTCTTTGACAAGTGTTGGGAAGTTTGATGAAGCTGAAAAGATTGTTGAGATCATGAAAAATGCTGGCTACGAGCCGGATGACACCATTTGCAGTCAAATTGTTTTCGGACTTTGTAAGATGAGGAGGTTCGAAGAAGCACGTAAGGTAATCGATGATGTGCAAGCTAGCAGTTCATTCATTCGCACGGAGACTTGGACCATCTTGATCCAAGGATACTGTGATGCTGGCGAACTAGACGATGCATTACTTTGTTTCTATAAGATGACCGAAACTTATTATGCAGATGTTGACCTAGTGGAAGTTCTGGTTATCAGTTTTCTTAAGCAAATGAGAATCAATGATGCATACAAGTTTCTTATAGAGATAACTGCTAAGTGTCGTACAACTCCACGGCAAACTACATTCAAGAAACTGATTGATAGTCTACTAGGAGTCAGAAAGTTTGAGGAGGCGCTCGACCTTCTTCGTTTGATGAAGTCTAATAAATACCCTTCATACCATGCACCATTTGTTTCACATATTGCGAAGTTTGGGACCATGGAGGATGCTGCAGAATTCCTGAGGGTATTGAGTATTAAAAATTACCCGTCTCGTACAGTTTACCTCCAAATTTTTGAATCCTTATTTCAAGAAGGTAGACTTTCAGAGGCCAAAGATCTATTGTACAAGTGTCCCCCCCATATCCAGGAACATACTAAAATCTGCGAACTTTTTGGTTCATCCAAGAGTCAGACGATCGAGAGTCAGGCGACCCATAGCCAAATGGCTGCAACTTGA 1923 0.3905 MNRMKAITSSLRLLKSSTSLATRVLATQNQVSHFSSSSFSLPLLNRSKDLLCFHNNHQKHYFSSKPNSILERVFANDWSEELEKELEECRESLTHETVVYVLKRLDKKPIKVFNFFNWVSEKDWFMSSSSVYSLVLRVLASNKNMKEFWIVLRAMKENGFYLDEETHLTISTGLKKEKMSSNVVDLKHFYKVMLEQNAMHSVVKKVVGIIQGSDWDDDKVEKELEKVKIQLSDDFVIRVVKELQNSPLKAFKFFHWVGKQSGYKQNTVTYNAVATVLSRMESIEEFWSILEEMKSVGHELDLDTYIKISRQLEKNRMMEDAVKLYEHMMDSSYKPSVLDCIMLLNSISACDKPDLDLVFRVAEKFESTGYTLSKAVYDGIHRSLTSVGKFDEAEKIVEIMKNAGYEPDDTICSQIVFGLCKMRRFEEARKVIDDVQASSSFIRTETWTILIQGYCDAGELDDALLCFYKMTETYYADVDLVEVLVISFLKQMRINDAYKFLIEITAKCRTTPRQTTFKKLIDSLLGVRKFEEALDLLRLMKSNKYPSYHAPFVSHIAKFGTMEDAAEFLRVLSIKNYPSRTVYLQIFESLFQEGRLSEAKDLLYKCPPHIQEHTKICELFGSSKSQTIESQATHSQMAAT* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4055 640 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Mal5g4055 640 TIGRFAM PPR: pentatricopeptide repeat domain 516 544 IPR002885 -
Mal5g4055 640 TIGRFAM PPR: pentatricopeptide repeat domain 446 472 IPR002885 -
Mal5g4055 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Mal5g4055 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Mal5g4055 640 Pfam PPR repeat 516 543 IPR002885 -
Mal5g4055 640 Pfam PPR repeat 268 297 IPR002885 -
Mal5g4055 640 Pfam PPR repeat 131 160 IPR002885 -
Mal5g4055 640 Pfam PPR repeat 446 472 IPR002885 -
Mal5g4055 640 Pfam PPR repeat 380 404 IPR002885 -
Mal5g4055 640 PANTHER OS01G0970900 PROTEIN 1 623 - -
Mal5g4055 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Mal5g4055 640 PANTHER OS01G0970900 PROTEIN 1 623 IPR044578 GO:0008380
Mal5g4055 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 473 IPR002885 -
Mal5g4055 640 Gene3D Tetratricopeptide repeat domain 381 516 IPR011990 GO:0005515
Mal5g4055 640 Gene3D Tetratricopeptide repeat domain 69 210 IPR011990 GO:0005515
Mal5g4055 640 Gene3D Tetratricopeptide repeat domain 211 356 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4055 Mal-Chr5 110753769 110755691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4055 317 629 Glycosyltransferase AT1G05670 23.547 7.30e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4055 - - gmx:100815857 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4055 5 110753769 110755691 Mal5g4055 5 110753769 110755691 ECH