Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4033 ATGAATGACTTCACCATCACCACCCTCCTCCACCTTCAACATAAACAAAACCCTATCTCCATTCTCACCTACCAATATCTCACTTCCATCAAAACCCTAACACCCCATATCACATGCCTCGCAGTCCACCGTAACCTTCTATACGCTGCATCTCTCAACCTCATCAACGTCTTTGATCTCTCTTCCTCCCATTACACCCTCATCGACACCTTCAACGAAACCTCCACTTCAGGTTTCGTCAAGTCCATCACGTTTAACGGTTCAAGAATCTTCACTGCTCACCAAGACTGTAAGATTCGCGTATGGCTTATCACATCTTCAAAACGACACCGTCTAATATCTTCACTTCCATCTGTCAAAGACCGGTTGCGCCGCTGCATCGTGCCAAAAAACTACGTCAGCGTTCGACGTCACCGGAAGAGTCTTTGGATCCAACATAACGACACGGTGTCGGGTTTAGCAGTAAACGAGAAAGAGAAACTCATGTACTCAGTTTCGTGGGATAAAACTTTTAAGATTTGGGATTTGTCTACAGGTTCTTTCCGGTGTTTGGAGTCTTTTAACGGTCACGATGACGCTGTTAACGCTGTTGTAGTTTCCGATGACGGTGCCGTTTATACGGCGTCAGCTGATGGGTGCATCAAGGTTTGGAAGATGGATTGTGATGATGATAAGGTGAAACACTACGTGTTGGTGAGTACGGTAGGGAAGCAGAAACCAGCCGTTAATGCGTTGGCATTGAAAGGTGATGGTACGGTTTTGTTTTCCGGTGGAAGTGATGGAACGATTTGTTTGTGGGAGAGTGAAAAGTGTGATGAAAAGGGAAACGACGTCGTGTTGATGGAAACGTTGAGGGGACATAGTGGGGCTATACTTTGTTTGGTCAACGTGGATGAATTATTGGCGAGTGGGTCAGCTGATCTAACGGTCAGGATTTGGCGGAGGGAAAAGTTGGGTGGTGGGTATTGTTGTAGGGGAGTGTTGGAAGGACATGAGAAACCGGTTAAGTCGTTGGTGGCAGTTACTGGTGGTAGTGATGGTGATGATGATGATGAGGAGGAGGAGGTTGGGGATGGGGTTGTTACATTGTTTAGTGGTAGTCTTGATGGGGATATTAGAGTGTGGGAAGTGTTTGGATTAGTTTAA 1146 0.4625 MNDFTITTLLHLQHKQNPISILTYQYLTSIKTLTPHITCLAVHRNLLYAASLNLINVFDLSSSHYTLIDTFNETSTSGFVKSITFNGSRIFTAHQDCKIRVWLITSSKRHRLISSLPSVKDRLRRCIVPKNYVSVRRHRKSLWIQHNDTVSGLAVNEKEKLMYSVSWDKTFKIWDLSTGSFRCLESFNGHDDAVNAVVVSDDGAVYTASADGCIKVWKMDCDDDKVKHYVLVSTVGKQKPAVNALALKGDGTVLFSGGSDGTICLWESEKCDEKGNDVVLMETLRGHSGAILCLVNVDELLASGSADLTVRIWRREKLGGGYCCRGVLEGHEKPVKSLVAVTGGSDGDDDDEEEEVGDGVVTLFSGSLDGDIRVWEVFGLV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4033 381 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 377 IPR045182 -
Mal5g4033 381 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 25 377 - -
Mal5g4033 381 Gene3D - 224 379 IPR015943 GO:0005515
Mal5g4033 381 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Mal5g4033 381 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Mal5g4033 381 PRINTS G protein beta WD-40 repeat signature 301 315 IPR020472 -
Mal5g4033 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 220 IPR001680 GO:0005515
Mal5g4033 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 267 IPR001680 GO:0005515
Mal5g4033 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 180 IPR001680 GO:0005515
Mal5g4033 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Mal5g4033 381 Gene3D - 16 122 IPR015943 GO:0005515
Mal5g4033 381 Pfam WD domain, G-beta repeat 282 313 IPR001680 GO:0005515
Mal5g4033 381 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Mal5g4033 381 Pfam WD domain, G-beta repeat 239 266 IPR001680 GO:0005515
Mal5g4033 381 Pfam WD domain, G-beta repeat 145 175 IPR001680 GO:0005515
Mal5g4033 381 ProSitePatterns Trp-Asp (WD) repeats signature. 363 377 IPR019775 -
Mal5g4033 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 313 IPR001680 GO:0005515
Mal5g4033 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 267 - -
Mal5g4033 381 SUPERFAMILY WD40 repeat-like 22 377 IPR036322 GO:0005515
Mal5g4033 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Mal5g4033 381 Gene3D - 133 223 IPR015943 GO:0005515
Mal5g4033 381 SMART WD40_4 228 267 IPR001680 GO:0005515
Mal5g4033 381 SMART WD40_4 277 314 IPR001680 GO:0005515
Mal5g4033 381 SMART WD40_4 321 376 IPR001680 GO:0005515
Mal5g4033 381 SMART WD40_4 137 175 IPR001680 GO:0005515
Mal5g4033 381 SMART WD40_4 180 218 IPR001680 GO:0005515
Mal5g4033 381 SMART WD40_4 64 103 IPR001680 GO:0005515
Mal5g4033 381 SMART WD40_4 23 59 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4033 Mal-Chr5 110148095 110149349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g4033 175 376 Acyl Lipid Metabolism Gene Families AT3G18860 22.381 1.21e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4033 - - mtr:MTR_4g104410 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4033 5 110148095 110149349 Mal5g4033 5 110148095 110149349 ECH