Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4011 ATGGAAGCCATGGGCGTGTTTACTGGAAGCAATAGTATCTATGTCACATCCTCTCTCCTACGCACCACAAACTCAACAAAAACAAAGAACTTTCAATTATGTTCCACCCAACACCTATCTGCATTTCCTTCTAAATCCCATCTTTTCTCATCTTCTTCTACTTCTTCCTATGTCAAAACCATCCGCACCAAATGCACCACCGAACCCGGCATTTTCCTTCCCCACTTAATTGCTTCTCTCGAACAAGTTGACCAAACTTATATTATGGTGAAACCTGATGGCGTGCAACGTGGTCTTGTGGGTGAAATTATTTCAAGGTTTGAGAAAAAGGGGTTTAAGTTAATTGGCTTGAAGCTCTTTCAATGCTCTAAAGAATTGGCTGAGGAGCATTACAAGGACCTAAACCAAAAGTCTTTCTTCCCTAAGCTGATTGACTATATTACTTCAGGTCCCGTTGTGGCTATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCAGCACGTAAGCTTATAGGAGCAACAGATCCTCTGCAAGCAGAACCAGGCACAATAAGAGGAGACTTTGCTGTTCAAATGGGAAGGAATATTATTCATGGCAGTGACAGCCCTGAAAATGGCAACCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAATTATGCGAATGGACTCCTGTCCAACAACCATGGCTAAGAGAATAA 696 0.431 MEAMGVFTGSNSIYVTSSLLRTTNSTKTKNFQLCSTQHLSAFPSKSHLFSSSSTSSYVKTIRTKCTTEPGIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLIGLKLFQCSKELAEEHYKDLNQKSFFPKLIDYITSGPVVAMAWEGVGVVASARKLIGATDPLQAEPGTIRGDFAVQMGRNIIHGSDSPENGNREIALWFKEGELCEWTPVQQPWLRE* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4011 231 CDD NDPk_I 85 213 - -
Mal5g4011 231 Hamap Nucleoside diphosphate kinase [ndk]. 83 218 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mal5g4011 231 Pfam Nucleoside diphosphate kinase 85 217 IPR034907 -
Mal5g4011 231 Gene3D - 79 231 IPR036850 -
Mal5g4011 231 SUPERFAMILY Nucleoside diphosphate kinase, NDK 84 230 IPR036850 -
Mal5g4011 231 PRINTS Nucleoside diphosphate kinase signature 194 213 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mal5g4011 231 PRINTS Nucleoside diphosphate kinase signature 130 149 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mal5g4011 231 PRINTS Nucleoside diphosphate kinase signature 86 108 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mal5g4011 231 PRINTS Nucleoside diphosphate kinase signature 150 167 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mal5g4011 231 PRINTS Nucleoside diphosphate kinase signature 171 187 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mal5g4011 231 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 26 230 - -
Mal5g4011 231 ProSitePatterns Nucleoside diphosphate kinases active site. 194 202 IPR023005 -
Mal5g4011 231 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 26 230 - -
Mal5g4011 231 SMART ndk_5 83 220 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4011 Mal-Chr5 109827160 109839755 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4011 K00940 - gmx:100500478 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4011 5 109827160 109839755 Mal5g4011 5 109827160 109839755 ECH
Mal5g4011 5 109827160 109839755 Mal6g0106 6 1572952 1577519 PCT