Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3994 ATGGTGGTTGAAGAAGGAGAGGCATTGGTGGCATGCAGTGACAAAAACATGAAAATTGGGGTGACAATATGGGACATGGAAACAGGGGAAAAGATGCTTCACATACCAACATGTGCTTCACCATCTTTAGGTATGTTATGCTTAAGAAATAAGTTCCTTGTGGCATCACAATTGAACAAACACGGCTCTGTAGGTGGAGGAGCCATTCTTGTCTGGGCCTTGAACAAGGTAATGTTTTCATTACATAAAGAAGCACAGACACTCCTCCGATTAGAAATCTCTATTTTTACTTATATTTTATTATTTCAGCCACAACATCCACTTTTGAATTATACAGTGGAGGCCATTGGGCCACTTTCTAGCACCAAAGAAGGCATATACCTTGTGGGAGGTGGTTTATCTGGAACTGCTTATATTTGGGATGTGACTAGTGGAAAATTGTTGAAAACTTGGAAAGCTCATTATAAATCTCTAGACCACATAATATTTTCTAATGATGATTCTCTTCTTATTTCTGGTTCAGTTGATGGTATGATATGTGTTTGGTCCATGATAAGTTTGTTAGATGTGGAAGAAACAGAAAGCTCGAATCCTTTATTACATTGTTTGGCAGGGCACATGTCCTCCATAACAGGTCTTTTAGCTACAACTTCCAGTTGCTTTTCATTTTTAATATCAAGTTCTCTTGATGGAACATGCAAGGTTTGGGATTTTATCACTGGAAGGCTTATGCAAACTCAAAGTTATCCTTTGGCAATAACTTGTATCACCATTCACCAAGGAGAAAGTCTTTTGTTTTGTGGTACAGAAAATGGAACAATAATTGTCAACAAGCTTGATATTGGTTTAGAAGAAGGTCTTAATTCCATTATCAGAGGAGACCACTCACTTGAATTAAAAGGACATAATGGATCCATTTCTGCAATAACATCTAGTAGGGCATGCTTAATATCTTCTTCTGAAGACTGCACAATTTGCATATGGAATGTCATCAATTGGACAATCACTCAAAGATTCAATCTTCAAAAGGCAGGAAGAATAACTAATCTCCTGGTAATACTTCGGTCTTCGATGTTCTCCACATCAAATCACATGAGAGGATCCAATCAATATATTGTTTCTCCATTAGAAAAGTGTCCTCTACAAATCAACAAATACAAGGAAACTACCACTCTTCTTTCTCTGTGTCGTCTCTTCAAAGAAAGGAAAACTTACATTGATTTAAGAAGCTCTGGTTTATTGAGACAAAACATTTTTAATTCACAGAAAGCACGCATGCCTATGGCCATGGCCGTACAAATGAAAGTGGAAACAAATATAGAGAATCGTTTATGGGCAACAAAAATGGCAAAACATGTAATGGTGATAAACAAACATTTGCAGTCACGATTGTTGGATATGATACATCGCAGATTGTTTGGTTCAAACAAAATCAACTTTCAAAAACCAGGTAGAAAGAAGCTCAAAGTTAAGAGTATTTTACCACAAGGGGAAAATAAAAAACCTTAG 1509 0.3671 MVVEEGEALVACSDKNMKIGVTIWDMETGEKMLHIPTCASPSLGMLCLRNKFLVASQLNKHGSVGGGAILVWALNKVMFSLHKEAQTLLRLEISIFTYILLFQPQHPLLNYTVEAIGPLSSTKEGIYLVGGGLSGTAYIWDVTSGKLLKTWKAHYKSLDHIIFSNDDSLLISGSVDGMICVWSMISLLDVEETESSNPLLHCLAGHMSSITGLLATTSSCFSFLISSSLDGTCKVWDFITGRLMQTQSYPLAITCITIHQGESLLFCGTENGTIIVNKLDIGLEEGLNSIIRGDHSLELKGHNGSISAITSSRACLISSSEDCTICIWNVINWTITQRFNLQKAGRITNLLVILRSSMFSTSNHMRGSNQYIVSPLEKCPLQINKYKETTTLLSLCRLFKERKTYIDLRSSGLLRQNIFNSQKARMPMAMAVQMKVETNIENRLWATKMAKHVMVINKHLQSRLLDMIHRRLFGSNKINFQKPGRKKLKVKSILPQGENKKP* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3994 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 330 IPR001680 GO:0005515
Mal5g3994 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 246 IPR001680 GO:0005515
Mal5g3994 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 184 - -
Mal5g3994 502 Gene3D - 4 247 IPR015943 GO:0005515
Mal5g3994 502 Gene3D - 248 361 IPR015943 GO:0005515
Mal5g3994 502 Pfam WD domain, G-beta repeat 145 183 IPR001680 GO:0005515
Mal5g3994 502 Pfam WD domain, G-beta repeat 296 329 IPR001680 GO:0005515
Mal5g3994 502 Pfam WD domain, G-beta repeat 199 237 IPR001680 GO:0005515
Mal5g3994 502 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 340 IPR011047 -
Mal5g3994 502 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
Mal5g3994 502 PRINTS G protein beta WD-40 repeat signature 170 184 IPR020472 -
Mal5g3994 502 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Mal5g3994 502 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Mal5g3994 502 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 6 492 - -
Mal5g3994 502 PANTHER WD-REPEAT PROTEIN 18 6 492 IPR045227 -
Mal5g3994 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 184 IPR001680 GO:0005515
Mal5g3994 502 SMART WD40_4 240 278 IPR001680 GO:0005515
Mal5g3994 502 SMART WD40_4 144 183 IPR001680 GO:0005515
Mal5g3994 502 SMART WD40_4 292 329 IPR001680 GO:0005515
Mal5g3994 502 SMART WD40_4 196 237 IPR001680 GO:0005515
Mal5g3994 502 SMART WD40_4 106 141 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3994 Mal-Chr5 109611304 109614275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3994 125 288 Miscellaneous Gene Families AT5G08390 23.494 9.02e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3994 K14829 - gmx:102662801 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3994 5 109611304 109614275 Mal5g3994 5 109611304 109614275 ECH