Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3945 ATGGACGGAACCGGTAATCGAAATCCACCACCGTCAGCCGGCACTCCACCGCCTGAGCCATCACCGGAAAGCCTCCGTCATGTCAGCCGTATGATCAACAACAACCATTACACCTCACCTTCTCGAACAATCTACTCCGATAGGTTTATTCCGAGTAGATCTGCTTCGAAATTCGCTTTGTTTGATATCAATACTCCGACGGAAGGACGCGATGATAGTTCCAGCGCGTATACGACGCTTCTTAGAACGGCGTTGTTTGGACCGGATGTTGCCGGTCCGGTAACGCCGGAGAAGACGGACTCGCCGTCGATGACATTGCCGAATAGGAATATTTTTAGGTATAAGACGGAGACGAGGCAGTCCATGCACTCGCTTTCGCCGTTTATGGATGATGATGTTGTTCCTGGTGTTAATCATAGTCCGGTTAAGGCTCCTAGGAAGGTTCCTCGATCGCCTTATAAGGTGTTGGATGCACCTGCGTTGCAAGATGATTTTTATCTGAATCTGGTGGATTGGTCTTCACACAATGTGTTGGCTGTTGGATTGGGTAACTGTGTTTATCTTTGGAATGCTTGTAGCAGCAAGGTAACTAAATTATGTGATTTGGGTGTTGATGATTGTGTTTGCTCTGTTGGTTGGGCTCAACGCGGTACTCATCTTGCTGTTGGAACTAACAATGGTAAAGTTCAGATTTGGGATGCAGCACGGTGCAAGAAGATAAGATCTATGGAGGGCCATCGGTTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTCTTCTGTCCTCTGGTGGACGGGATAAGAATATTTATCAACGAGATATACGCACACAAGAAGATTTTGTTAGTAAACTGTCAGGACACAAATCAGAGGTTTGTGGATTGAAGTGGTCATATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAAATTGTTTGTTTGGAATCAACACTCGACTCAACCTGTCCTGAAGTACTGTGAGCACACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGAGGAGGTACTGCAGATCGATGTATTCGTTTCTGGAATACAACCACAAACTCACACCTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGTTTGGTCCAAAAATGTCAATGAACTAGTAAGCACACATGGCTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACTATGTCAAAGCTGGCCACTCTTACCGGCCATACTTACAGAGTTCTCTATCTTGCCATCTCGCCAGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACGCTTAGGTTCTGGAATGTTTTCCCTTCCCCTAAATCACAGAATACTGAAAGTGAAATCGGAGCATTATCTCTTGGAAGAACTACTATTAGGTGA 1416 0.4576 MDGTGNRNPPPSAGTPPPEPSPESLRHVSRMINNNHYTSPSRTIYSDRFIPSRSASKFALFDINTPTEGRDDSSSAYTTLLRTALFGPDVAGPVTPEKTDSPSMTLPNRNIFRYKTETRQSMHSLSPFMDDDVVPGVNHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGVDDCVCSVGWAQRGTHLAVGTNNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTESEIGALSLGRTTIR* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3945 471 Pfam WD domain, G-beta repeat 281 316 IPR001680 GO:0005515
Mal5g3945 471 Pfam WD domain, G-beta repeat 321 361 IPR001680 GO:0005515
Mal5g3945 471 Pfam WD domain, G-beta repeat 410 446 IPR001680 GO:0005515
Mal5g3945 471 SMART WD40_4 407 446 IPR001680 GO:0005515
Mal5g3945 471 SMART WD40_4 193 233 IPR001680 GO:0005515
Mal5g3945 471 SMART WD40_4 277 316 IPR001680 GO:0005515
Mal5g3945 471 SMART WD40_4 236 273 IPR001680 GO:0005515
Mal5g3945 471 SMART WD40_4 319 361 IPR001680 GO:0005515
Mal5g3945 471 SMART WD40_4 149 190 IPR001680 GO:0005515
Mal5g3945 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 325 IPR001680 GO:0005515
Mal5g3945 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 447 IPR001680 GO:0005515
Mal5g3945 471 MobiDBLite consensus disorder prediction 1 24 - -
Mal5g3945 471 SUPERFAMILY WD40 repeat-like 153 453 IPR036322 GO:0005515
Mal5g3945 471 Gene3D - 142 451 IPR015943 GO:0005515
Mal5g3945 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 316 - -
Mal5g3945 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 242 IPR001680 GO:0005515
Mal5g3945 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 447 - -
Mal5g3945 471 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 257 IPR024977 -
Mal5g3945 471 PANTHER PROTEIN FIZZY-RELATED 1 19 471 - -
Mal5g3945 471 ProSitePatterns Trp-Asp (WD) repeats signature. 433 447 IPR019775 -
Mal5g3945 471 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 19 471 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3945 Mal-Chr5 108966419 108971398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3945 220 449 Miscellaneous Gene Families AT5G08390 21.459 2.42e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3945 K03364 - gmx:100780928 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3945 5 108966419 108971398 Mal5g3945 5 108966419 108971398 ECH