Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3878 ATGGCAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCTGACCGGATCCCCGTGATTGTCGAGAAGGCGGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTCACAGTTGGACAGTTTGTCTATGTTATCCGTAAAAGAATTAAATTAAGTGCAGAAAAGGCGATCTTTATTTTTGTGGACAATGTCCTTCCACCTACAGGAGCAATAATGTCAGCCATATATGATGAGAAGAAGGATGAAGATGGGTTTCTTTATGTTACATACAGTGGGGAGAACACCTTTGGAGATCTGATTTCCCAGTAG 369 0.4201 MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISQ* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3878 122 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Mal5g3878 122 CDD Ubl_ATG8 12 114 - -
Mal5g3878 122 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Mal5g3878 122 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Mal5g3878 122 Gene3D - 1 117 - -
Mal5g3878 122 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3878 Mal-Chr5 107742845 107744699 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3878 K08341 - gmx:100781703 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3878 5 107742845 107744699 Mal5g3878 5 107742845 107744699 ECH