LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g3794	ATGACTTTAACACTTCGTTCTTCTTCAATTTCTTTCATCATTCAGAAAGAAACCAAGTTCCTTAAAACTTGTGATGATGTCTCTACCACTGTCACCTTTGCAAAAATTAAACCATCTTTTCGTCTCAAAGCCAAGAGTTCTATGCAAGTAGCACACACCACCTTCAACTCTGAAGTAAGCATAGAAGAGGAATGGGAGAAGGTGCATGCTCCATCAATTGTTCATAGTAACCATGATAATTCAAAGAGGGTACCAGTTTTTGTGATGCTGCCATTGGACACAGTAACAATGGGAGGAAACTTGAACAAGCCAAGAGCAATGAATGCTAGTTTGATGGCCTTGAAAAGTGCTGGAGTTGAAGGGGTGATGGTTGATGTTTGGTGGGGTTTGGTTGAAAAAGATGGACCTTTGAAGTATAACTGGGAAGCATATGCTGAGCTTGTGCAGATGGTGCAAATGCATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGAGGAAATGTTGGAGACTCTTGCAGTGTTCCTTTACCTCCATGGGTGATGGAAGAGATCAGCAAGAACCCTGACATAGTTTACACAGACAGATCAGGGAGGAGAAATCCTGAGTACATCTCATTGGGATGTGATTCAGTGCCTGTTCTAAAAGGAAGAACTCCCCTCCAAGTGTATGCTGATTACATGAGGAGCTTTCGTGACAGATTCAGTGATTACTTGGGCAGTGTCATCTCGGAAATACAAGTAGGAATGGGTCCATGTGGTGAGCTGAGATATCCATCATATCCAGAAAGCAATGGAACTTGGAAGTTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCGTCCTTGGCAGCAGCAGCCGAGGCCATCGGGAAGAAGGAATGGGGAGGAGGTGGACCCCATGATTCCGGCCAGTACAATCAGTTTCCGGAGGATACTGGTTTTTTCAGAAAAGATGGAACATGGAACTCTGAATATGGACAGTTCTTTCTGGGATGGTACTCCGGTAAATTGTTGGAACACGGTGATAGGATCCTTGAATCAGCCAAAGAAATATTCCAGACATCTGGTGTGAAACTATCTGGTAAAGTCGCTGGAATCCATTGGCATTACAGATCAAGGTCGCACGCAGCTGAACTAACTGCTGGCTACTATAATACTCGGCATAACGATGGATATCTTCCAATAGCCAAAATGTTTGCAAACCATGATGTTGTCTTCAATTTCACCTGCATGGAGATGAAAGACAGAGAACAACCTGGCCATGCTAACTGCTCACCAGAAGGGTTAGTTCACCAAGTAAAGACGGCAACAAAGACGGCTAGAATAGAACTTGCTGGGGAAAATGCACTGGAGAGATATGATGCAGGTGGATATGCTCAAGTTTTGTCAACAAGTATGTCAGAATCCGGCAGTGGATTGGCTGCATTTACATACTTGAGAATGAATAAAAAGTTGTTCGAAGGAGATAATTGGCGGCACTTAGTGGATTTTGTAAGAAATATGTCTGAAGGCGGACGGAGACAAAGACTTCCAGATTCCGATTCACGCGGAAGTGATATTTATGTTGGGCACATCAAGAAAACTAAGGAGCACAAACAACAGGTTGAGGCTATTCTTGTCTGA	1644	0.4294	MTLTLRSSSISFIIQKETKFLKTCDDVSTTVTFAKIKPSFRLKAKSSMQVAHTTFNSEVSIEEEWEKVHAPSIVHSNHDNSKRVPVFVMLPLDTVTMGGNLNKPRAMNASLMALKSAGVEGVMVDVWWGLVEKDGPLKYNWEAYAELVQMVQMHGLKLQIVMSFHQCGGNVGDSCSVPLPPWVMEEISKNPDIVYTDRSGRRNPEYISLGCDSVPVLKGRTPLQVYADYMRSFRDRFSDYLGSVISEIQVGMGPCGELRYPSYPESNGTWKFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFRKDGTWNSEYGQFFLGWYSGKLLEHGDRILESAKEIFQTSGVKLSGKVAGIHWHYRSRSHAAELTAGYYNTRHNDGYLPIAKMFANHDVVFNFTCMEMKDREQPGHANCSPEGLVHQVKTATKTARIELAGENALERYDAGGYAQVLSTSMSESGSGLAAFTYLRMNKKLFEGDNWRHLVDFVRNMSEGGRRQRLPDSDSRGSDIYVGHIKKTKEHKQQVEAILV*	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g3794	547	PANTHER	-	1	546	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	Gene3D	Glycosidases	76	545	-	-
	Mal5g3794	547	SUPERFAMILY	(Trans)glycosidases	82	511	IPR017853	-
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	139	157	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	328	347	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	253	275	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	399	422	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	118	132	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	381	392	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	436	458	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	364	380	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	161	182	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	PANTHER	BETA-AMYLASE	1	546	-	-
	Mal5g3794	547	Pfam	Glycosyl hydrolase family 14	87	504	IPR001554	GO:0000272\|GO:0016161
	Mal5g3794	547	ProSitePatterns	Beta-amylase active site 1.	165	173	IPR018238	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g3794	Mal-Chr5	106509860	106512331	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g3794	1	547	Glycoside Hydrolase	AT4G17090	71.609	0.0	828

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g3794	K01177		-	gmx:100818063	949.118

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g3794	5	106509860	106512331	Mal5g3794	5	106509860	106512331	ECH