Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3499 ATGGCTAAAATTCTAAAACCATCCAAGTGGTTCTCTAACAAATTAGGTCTCAAGCTTATTAAATCAAGATCTTCCAATTCATCACCATTATGCTCTCCAAGATCTCCAGTTTCATTGTCTACCACACCAAAAAATAACAACAATGAAGATGAAAAAGGATTAAGAGAGGTATTCAATTACTTTGATGGTGATGGAGATGGAAAAATTTCAGCTTATGAATTAAGGTCATATTTTGGATCAATTGGTGAGCACATGTCTCATGAGGAAGCTGAAAGGGTGATCAATTACCTCGATACCGACGGCGACAACTTGTTGGATTTCAATGATTTTATGAAGTTGATGAAAGTTGAAGGAGGAAGGGATGATGATAAAGATTTAAGAAAAGCTTTTGAGATGTTTGTGTGGGAGGAGAAAGAAGGTTGTATTACTCCAAAAGGGTTGCAAAGGATGTTGCAACGTCTTGGTGATGATAGGTCTTATGAAGAGTGTGTGGTTATGATTGATGCATTTGATATAGATCATAATGGGGTTCTTGATTTCAACGAGTTTCATCAAATGATGGCTTAA 567 0.3616 MAKILKPSKWFSNKLGLKLIKSRSSNSSPLCSPRSPVSLSTTPKNNNNEDEKGLREVFNYFDGDGDGKISAYELRSYFGSIGEHMSHEEAERVINYLDTDGDNLLDFNDFMKLMKVEGGRDDDKDLRKAFEMFVWEEKEGCITPKGLQRMLQRLGDDRSYEECVVMIDAFDIDHNGVLDFNEFHQMMA* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3499 188 CDD EFh 54 115 IPR002048 GO:0005509
Mal5g3499 188 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Mal5g3499 188 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Mal5g3499 188 Pfam EF-hand domain pair 53 115 IPR002048 GO:0005509
Mal5g3499 188 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Mal5g3499 188 ProSiteProfiles EF-hand calcium-binding domain profile. 158 188 IPR002048 GO:0005509
Mal5g3499 188 PANTHER CALCIUM BINDING PROTEIN 14 188 - -
Mal5g3499 188 Pfam EF-hand domain pair 140 187 IPR002048 GO:0005509
Mal5g3499 188 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 14 188 - -
Mal5g3499 188 MobiDBLite consensus disorder prediction 23 51 - -
Mal5g3499 188 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Mal5g3499 188 MobiDBLite consensus disorder prediction 23 47 - -
Mal5g3499 188 SMART efh_1 53 81 IPR002048 GO:0005509
Mal5g3499 188 SMART efh_1 89 117 IPR002048 GO:0005509
Mal5g3499 188 SMART efh_1 162 188 IPR002048 GO:0005509
Mal5g3499 188 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Mal5g3499 188 SUPERFAMILY EF-hand 38 187 IPR011992 -
Mal5g3499 188 Gene3D - 36 119 - -
Mal5g3499 188 Gene3D - 120 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3499 Mal-Chr5 100458110 100458676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3499 6 188 EF-hand Containing Proteins AT3G50770 51.500 2.27e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3499 K13448 - gmx:100306370 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3499 5 100458110 100458676 Mal5g3499 5 100458110 100458676 ECH