Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3478 ATGGAAGATCCTCTCATGCGCAATCAAAACGCCGCCGTTCAAGCTCGTACCAAAGCTCAGAATCGCGCCAACGTTCTTCAACTCAAGCTGATTGGACAGAGTCATCCAACTGGTTTGACTGCGAATTTGTTGAAGCTGTTTGAGCCTCGGCCGCCTTTGGAGTATAAACCTCCACCGGAGAAACGAAAATGTCCTCCATTAACAGGGATGGCGCAATTTGTGAGCAAGTTTGCTGAACCTGGTGAACCGGAATATTCTCCGCCTGTGCCAGTAGTTGAAACTCCTGCAGAAAGAAGGGCTAGAGTACACAAGTTAAGACTAGAGAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATAACGATTCAAATATATCAGGAGATCCATACAAGACTTTATTTGTGGCCAGACTTAGTTATGAGACTACGGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTTCGGCTGGTTACTGATAATGAGTCAAATAAGCCAAGGGGTTATGCCTTCATTGAATACCTGCACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTCGAAGGGTGCTTGTGGATGTTGAACGTGGGAGAACCGTTCCAAATTGGCGACCGCGCCGTCTAGGTGGTGGGCTTGGTACTACTAGAGTGGGGGGTGAAGAAGTTAATCAGCGACATTCGGGAAGGGAGCAACAGCAGTCAGGACCTTCTCGTTCTGAAGAACCCAGAGTGCGGGAGGATCGACATGCTGATCGGGACAGAGAAAAGTCACGTGAAAGAGGTAAGGACAGAGATAGAGAACGGGAGCGATCACGTGAACGATCTAGTGATAAGGCTAGGGATCGTGATCGCGATCATAGAGAGGATAGGCACCACAGAGACCGGGATCGGGATAGGAATAGGGACAGGGACAGAGGTAAGGAAAGGGACAGAGAAAGAGATCGCGGACGTGATCGAGAGAGAGGACGCGATCGTGATCGTGGTCGGGAACGTGATCGTGACAGAGAGAGGGATCATGATCGGGATGTAGAACATGATCGTTATCGCGAAAAGGATAAGGATTATGAAGTTGGAGAAACTGATCGGGGACGATCCCATGATAGGGGGACTGATTATGATCATGTTGAATCTAAACATGAGAAGGAACCTCATGGTGAAATAGAGCGGGACTATGAACCTGATGATCACCGTGGGCGGTACAACGAACCTGGGCATGGACATAGGCATGCAGATCCTGAACATGATCCTGATCACTATGACCATTATGAGCATCAGAGAGGACGGGGGAAGTATGATGAAGGAGATGACCGTGGTGATTACAATCAATATCCTGATAAGATGGAAGATGACCATCACACTGAACGAGCAAAATCTAAATCGCGTGATAGGGACAGAAACCGTGATAAGGACCATGATTATCATCGCTCAGAGAGGTCCCATTCTCGAGAATATGATTACTAG 1509 0.4778 MEDPLMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDSNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDNESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRVREDRHADRDREKSRERGKDRDRERERSRERSSDKARDRDRDHREDRHHRDRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHDRDVEHDRYREKDKDYEVGETDRGRSHDRGTDYDHVESKHEKEPHGEIERDYEPDDHRGRYNEPGHGHRHADPEHDPDHYDHYEHQRGRGKYDEGDDRGDYNQYPDKMEDDHHTERAKSKSRDRDRNRDKDHDYHRSERSHSREYDY* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3478 502 PANTHER - 5 364 - -
Mal5g3478 502 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 5 364 - -
Mal5g3478 502 SUPERFAMILY RNA-binding domain, RBD 125 235 IPR035979 GO:0003676
Mal5g3478 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 206 IPR000504 GO:0003723
Mal5g3478 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Mal5g3478 502 SMART rrm1_1 136 209 IPR000504 GO:0003723
Mal5g3478 502 CDD RRM_snRNP70 134 224 IPR034143 GO:0030619
Mal5g3478 502 MobiDBLite consensus disorder prediction 255 502 - -
Mal5g3478 502 MobiDBLite consensus disorder prediction 217 502 - -
Mal5g3478 502 Gene3D - 122 247 IPR012677 -
Mal5g3478 502 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 38 126 IPR022023 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3478 K11093 - gmx:100800903 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3478 5 100044878 100049895 Mal5g3478 5 100044878 100049895 ECH