Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3470 ATGAGAGGCTACGGGCCACCTACTTCCATTCCATCACAGGCCAGCCACTACCCTACCTTGGGAGTCAACATGTTCCTTCTTAGAAGGCAAACCCAAAATCAGCAGGAGAATGGCTCCTCAAATAATGATACTAAGGTGGCTGAACTAAGAGCTGCTATTGGGCCCTTGTCTGGGCGTCGATTGAAGTATTGCACAGATGCATGTTTAAGGAGATATTTAGAAGCACGAAACTGGAATGTTGATAAAGCCAAGAAAATGCTGGAGGAATCGTTCAAGTGGAGGTCTACTTATAAGCCTGAGGAAATCCGTTGGGCTGAAGTAGCACATGAGGGCGAGACGGGAAAAGTCTCCGTAGCCAACTTTCATGATAGGCTTGGGAGGACAGTGCTTATTATGAGACCAGCGATGCAGAACACAGCATCAGAAGAAAATAATATCAAGCATTTAGTCTATCTGTTGGAAAATGCCATACTCAATCTTTCCGATGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTTTCATTTAGCACAAAGCTTTCTATTAAAACTGCTCGTGAGATTATTCACATTTTACAGAACCACTATCCGGAAAGGCTTGGTATAGCTATTCTGCACAACCCACCAAGAATATTTCAGGCTTTCTATAAGGCTGTAAAATACTTCATGGACCCCAAGACAGCCCAGAAGGTAAAATTTGTTTACCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTTGACATGGATAATCTTCCAAGTGAATTTGGTGGAAAAACTACTTTAAAGTATGACCATGAAGAGTTCTCAAAGTTGATGACTGAAGATGATGGGAAAACTGCCAAGTTCTGGGGACTTGATGATGAGAAGCCCTTCACCACTAAGAATGGCCATTCTGGAGCAGAGGTAGCACCAGAGCCAGTGGCCTAG 942 0.4321 MRGYGPPTSIPSQASHYPTLGVNMFLLRRQTQNQQENGSSNNDTKVAELRAAIGPLSGRRLKYCTDACLRRYLEARNWNVDKAKKMLEESFKWRSTYKPEEIRWAEVAHEGETGKVSVANFHDRLGRTVLIMRPAMQNTASEENNIKHLVYLLENAILNLSDGQEQMSWLIDFTGFSFSTKLSIKTAREIIHILQNHYPERLGIAILHNPPRIFQAFYKAVKYFMDPKTAQKVKFVYPNNKDSVELMKSLFDMDNLPSEFGGKTTLKYDHEEFSKLMTEDDGKTAKFWGLDDEKPFTTKNGHSGAEVAPEPVA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3470 313 MobiDBLite consensus disorder prediction 294 313 - -
Mal5g3470 313 PRINTS Cellular retinaldehyde-binding protein signature 254 263 - -
Mal5g3470 313 PRINTS Cellular retinaldehyde-binding protein signature 185 206 - -
Mal5g3470 313 PRINTS Cellular retinaldehyde-binding protein signature 68 90 - -
Mal5g3470 313 PRINTS Cellular retinaldehyde-binding protein signature 113 137 - -
Mal5g3470 313 SUPERFAMILY CRAL/TRIO N-terminal domain 38 105 IPR036273 -
Mal5g3470 313 CDD SEC14 122 263 IPR001251 -
Mal5g3470 313 Pfam CRAL/TRIO, N-terminal domain 65 89 IPR011074 -
Mal5g3470 313 SMART CRAL_TRIO_N_2 65 90 IPR011074 -
Mal5g3470 313 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 106 268 IPR001251 -
Mal5g3470 313 Gene3D - 21 295 IPR036865 -
Mal5g3470 313 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 29 312 - -
Mal5g3470 313 SMART sec14_4 110 265 IPR001251 -
Mal5g3470 313 PANTHER GH16843P 29 312 - -
Mal5g3470 313 Pfam CRAL/TRIO domain 113 262 IPR001251 -
Mal5g3470 313 SUPERFAMILY CRAL/TRIO domain 105 277 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3470 Mal-Chr5 99784913 99788432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3470 69 257 Acyl Lipid Metabolism Gene Families AT1G55840 26.341 2.74e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3470 - - gmx:100800024 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3470 5 99784913 99788432 Mal5g3470 5 99784913 99788432 ECH