Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3240 ATGCCAATTGTTGAGTACGGAACAGGTAGCTATAATCATTATGGATATGGTGGTGGCTTCCAGCCCCCTCCTCCTTTTCCTGTGGTTCGTCTCAGGGGGCTCCCATTTAACTGCACAGACATAGACATTTTGAAGTTCTTTGCTGGCCTGACCATTGTCGATGTGCTGCTGGTTAACAAGAGTGGACGGTTCTCTGGAGAGGCTTTTGTAGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGGGATCGACAGAACATGGGTCGCAGATATGTGGAAGTCTTCAGGTGCAAGAAGCAGGATTATTACAACGCTGTTGCTGGTGAGATCAATTATGAAGGAATATATGACAACGATTACCATGGAAGCCCTCCTCCCTCCAGGTCCAAGAGGTTCAGTGATAAAGATCAAATGGAATACACTGAGATATTGAAGATGCGTGGACTTCCGTTCTTGGTGACTAAATCTCAAATCATTGAGTTTTTTAATGATTACAAGCTGATAGAAGATAGGGTACACATTGCATGTCGCCCGGATGGTAAAGCTACTGGAGAGGCATATGTAGAGTTTGTTTCACCAGATGAGGCTAAGAGAGCAATGTTCAAGGATAAAATGACCATTGGATCGAGGTATGTGGAGCTGTTTCCTTCAACACCAGATGAAGCTAGACGGGCCGAGTCAAGATCAAGGCAGTAA 702 0.4501 MPIVEYGTGSYNHYGYGGGFQPPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEINYEGIYDNDYHGSPPPSRSKRFSDKDQMEYTEILKMRGLPFLVTKSQIIEFFNDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESRSRQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3240 233 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 233 - -
Mal5g3240 233 SUPERFAMILY RNA-binding domain, RBD 143 230 IPR035979 GO:0003676
Mal5g3240 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 221 IPR000504 GO:0003723
Mal5g3240 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 92 IPR000504 GO:0003723
Mal5g3240 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 214 IPR000504 GO:0003723
Mal5g3240 233 CDD RRM_hnRNPH_ESRPs_RBM12_like 28 97 - -
Mal5g3240 233 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 9 233 - -
Mal5g3240 233 SUPERFAMILY RNA-binding domain, RBD 16 106 IPR035979 GO:0003676
Mal5g3240 233 CDD RRM_hnRNPH_ESRPs_RBM12_like 145 217 - -
Mal5g3240 233 Gene3D - 128 233 IPR012677 -
Mal5g3240 233 SMART rrm1_1 28 97 IPR000504 GO:0003723
Mal5g3240 233 SMART rrm1_1 145 217 IPR000504 GO:0003723
Mal5g3240 233 Gene3D - 27 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3240 Mal-Chr5 95166646 95170224 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3240 K12898 - gmx:100816391 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3240 5 95166646 95170224 Mal5g3240 5 95166646 95170224 ECH