Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3212 ATGGAATCGCAACAACCCGATTCAGCTCGCGCACGTCCTCGACTCTTCATCCAAGAAATGATTATGCGGAACTTCAAATCTTACGCTGGTGAACAACGCGTTGGTCCCTTTCATAAGAGTTTTTCGGCTGTGGTTGGACCGAATGGAAGTGGGAAGAGTAATGTGATTGATGCTATGTTGTTTGTGTTTGGGAAACGAGCGAAGCAGATGCGATTGAACAAAGTTTCGGAGCTTATACATAATTCTAGCAATCATCAGAATTTGGATAGTGCTGGGGTTTCTGTTCATTTTCAGGAGATTATTGATTTGGAAGATGGAACATATGAGGCTGTTCCTGGAAGTGACTTTGTAATTACAAGGGTGGCTTTTCGGGACAACTCCTCTAAGTATTACATTAATAACCGTTCAAGTAACTTTACTGAAGTTACCAAGAAATTGAAAGGGAAAGGTGTTGACCTTGACAATAATAGGTTTCTGATCCTTCAGGGCGAAGTTGAGCAGATTTCACTTATGAAACCAAAATCTCAAGGACCTCATGATGAAGGCTTTCTAGAATATTTGGAAGATATCATTGGGACCAACAAATATGTAGAAAAAATTGATGAGTCATATAAACAGTTAGAATCTCTAAATGAGAGAAGATCTGGGGTGGTGCAAATGGTCAAGCTATCTGAGAAAGAAAGAGACAGCTTGGAGGATGTGAAGAATGAAGCAGAAGCGTACATGCTTAAAGAGTTATCTCTGTTGAAATGGCAAGAGAAGGCTACAAAGCTAGCTGTTGATGATACAGGTGGAAAAATGGATGAGTTACAAGTGGGTGTTGCTAGCCTAGAAGAAAATCTTAAGGCAGAAAGGGATAAAATCCAAGAAAGCAAAAAAAATCTGAAAGACCTTGAAACTAAGCACAACACCTATATGAAAAGACAAGAGGAGCTAGATAATGATATGAGGAAGTGTAAGGAAGAATTCAAAGAGTTTGAGAGGCAGGATGTCAAGTATCGAGAAGATTTTAATTACATGAAACAGAAGATCAAGAAGCTGGAGGATAAAGTGGAAAAGGATTCATCAAAAATTGAAGCTCTTGTGAAGGAGGGTGAAGACTCAAATGATATGATACCAAAACTTGAGGATAGTATCCCTAAACTACAAAAGTTGTTGCTTGATGAGGAGAAGGTCTTGGAAGAAATCACAGAGAGTTCTAAAGTTGAAACTGAGAAATTCCGCTCTGAGCTTGCTAAATTTCGTGCGGAGCTTGAACCTTGGGAAAAAGATTTGATCGAGCACAAGGGAAAGCTTGAAGTTGCATCTAGTGAGGCTAAGCTTCTAAATGAGAAGCATGAAGGTGCCCGTGAAGCCTTTAAAGATGCTCAAAATCAGATGAAAAGTATATCAGAAACAATTAAATCAAAAACTGCTAGCATTTCCCAAACAAAGAGCGATATAGAAAAGAGCAAGTGTGAAGCATTAGAAGCTCACCGAGTGGAAGAAGAATGTATTAAAGAACAAGATGCCCTGATTCCTCTTGAACAAGGCGCTAGACAGAAGGTTGCTGAACTGAAGTCTGTTTTGGATTCAGAGAAAAGCCAGGGATTAGTTCTAAAAGCAATCATGAAAGCTAAGGAAACCGGTCAAATAGAAGGAATATATGGACGCTTGGGTGACCTAGGTGCTATTGATGCAAAGTTTGATGTTGCAATATCGACAGCATGTTCTGCTGGCCTTGATAATATTGTCGTAGAAACAACAAATGCAGGAGAAGCCTGTCTTGCATTAGTTCGTAGAGAGAAACTTGGCATTGTTACTTGCTTGATATTGGAGAAGCAAGTTGATCTCATTCCAATGATGAAAAAGAGTGTAAGCACTCCAGAGGGGGTTCCCCGCCTTTTTGATTTAGTAAAGGTTCGAGATGAAAGAATGAAACTTGCGTTCTTTGCAGCACTTCGAAACACAGTTGTCGCTAAGGATCTTGACCAGGCAACACGCATAGCATATGGTGGGAACAATGAGTTTCGGCGAGTTGTTACTCTTGATGGTGTACTTTTTGAAAAATCTGGAACAATGAGTGGTGGGGGTAGTAAGCCCAAGGGTGGGAAGATAGGCACATCTATTCGAGCTACAAATGTGTCTGGAGAAGCCGTTGCAAGTGCTGAGATGGAATTGTCTGGATTGACTGATAAATTAAATTTAATTCGCCAAAGAATGATGGATGCTGTGAGACGATATCAGGTCGCAGAAAAAACTATTGCTGCTTTGGAAATGGAGCTGGCTAAAAGCCAGAAGGAGGTTGAAAGTTTGAATTCGCAACATTGTTATATTGAAAAACAACTTGGTTCCCTTGAAGTTGCATCAAATCCACAAGAGAACGAGCTTGATCGGTTGAAAGAGCTGAAGAAGATTATTTCTGCAGAAGAAAAAGATATTAATAGACTTACTGATGGATCTAAAAAACTGAAGGAAAAGGTTTCGGAGCTTCAGAAGAAAATAGAGAATGCTGGAGGTGAAAAATTAAAATCTCAGAAGTTGAAGGTCCAGAAAATTCAGTCTGATATTGACAAGACCAGCTCAGAGATTAACCGTCACAAGGTTCAAATAGAGACGGGACAAAAGATGATAAAGAAGTTGACTAAAGGAATAGAGGATTCAAAGAAGGAAAAAGAACGGTTAACTGAAGAGAGGGAAAAGTTAAAAGGAAACTTCGACGAAATATTGAAGAAAGCAAAAGCTGTTCAAAATAATTATGAGAAAACAGAAGAGATGATCAACAAACATCGTGATGTCTTAGAGGAAGCAAAATCTGAGCATGATAAGATGCAAAAAATAGTGGACGAATTGCGTGCATCTGAGGTTGATGCTGATTTTAAATTAAAAGACATGAAGAAAGCGTACAAAGAATTGGAAATAAAGGGGAAAAGTTACAGGAAAAGATTAGATGAGTTGCAAACTGCTATTTCCAAGCATCTTGAGCAAATTCAGGTAGATTTAGTGGATCATGAAAAGCTACAGGCTACATTGACTGAAGAACATCTCAATGCTGCTTGTGACCTGAAAAAGGCCTGTGAAACAGTCACATTGCTCGAAGCACAACTGAAAGAGATGAATCCAAATCTTGATTCAATTGCGGAGTATCGGAAGAAGGTAGCATTGTACAATGAGCGAGTTGAAGAACTTAATGCAGTCACTCAGGAGCGGGATGATATAAAGAAGCAATATGATGAATTGAGAAAGAAGAGATTGGATGAGTTTATGGAAGGATTTAATGCCATATCATTAAAGTTAAAGGAAATGTACCAGATGATTACCCTTGGAGGTGATGCAGAACTCGAGCTCGTGGATTCTTTGGATCCTTTCTCTGAAGGCGTTGTATTTAGTGTTAGACCACCAAAGAAAAGCTGGAAAAATATTGCTAACTTATCGGGTGGTGAAAAGACTCTAAGCTCATTGGCTCTTGTATTTGCTCTTCATCATTACAAGCCTACACCGCTTTATGTAATGGATGAAATTGATGCCGCTTTGGACTTCAAGAATGTATCTATCGTCGGGCATTATGTGAAAGACAGGACTAAAGATGCTCAATTCATAATCATTAGTCTAAGGAACAATATGTTTGAATTGGCTGATCGACTTGTTGGTATTTATAAAACTGATAATTGCACAAAGAGCATCACTATTGATCCGTGCAGTTTTGTCGTTTGCCAGAAGGGTGCATGA 3708 0.3916 MESQQPDSARARPRLFIQEMIMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSSNHQNLDSAGVSVHFQEIIDLEDGTYEAVPGSDFVITRVAFRDNSSKYYINNRSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKSQGPHDEGFLEYLEDIIGTNKYVEKIDESYKQLESLNERRSGVVQMVKLSEKERDSLEDVKNEAEAYMLKELSLLKWQEKATKLAVDDTGGKMDELQVGVASLEENLKAERDKIQESKKNLKDLETKHNTYMKRQEELDNDMRKCKEEFKEFERQDVKYREDFNYMKQKIKKLEDKVEKDSSKIEALVKEGEDSNDMIPKLEDSIPKLQKLLLDEEKVLEEITESSKVETEKFRSELAKFRAELEPWEKDLIEHKGKLEVASSEAKLLNEKHEGAREAFKDAQNQMKSISETIKSKTASISQTKSDIEKSKCEALEAHRVEEECIKEQDALIPLEQGARQKVAELKSVLDSEKSQGLVLKAIMKAKETGQIEGIYGRLGDLGAIDAKFDVAISTACSAGLDNIVVETTNAGEACLALVRREKLGIVTCLILEKQVDLIPMMKKSVSTPEGVPRLFDLVKVRDERMKLAFFAALRNTVVAKDLDQATRIAYGGNNEFRRVVTLDGVLFEKSGTMSGGGSKPKGGKIGTSIRATNVSGEAVASAEMELSGLTDKLNLIRQRMMDAVRRYQVAEKTIAALEMELAKSQKEVESLNSQHCYIEKQLGSLEVASNPQENELDRLKELKKIISAEEKDINRLTDGSKKLKEKVSELQKKIENAGGEKLKSQKLKVQKIQSDIDKTSSEINRHKVQIETGQKMIKKLTKGIEDSKKEKERLTEEREKLKGNFDEILKKAKAVQNNYEKTEEMINKHRDVLEEAKSEHDKMQKIVDELRASEVDADFKLKDMKKAYKELEIKGKSYRKRLDELQTAISKHLEQIQVDLVDHEKLQATLTEEHLNAACDLKKACETVTLLEAQLKEMNPNLDSIAEYRKKVALYNERVEELNAVTQERDDIKKQYDELRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITIDPCSFVVCQKGA* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3212 1235 Pfam SMC proteins Flexible Hinge Domain 546 663 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal5g3212 1235 CDD ABC_SMC4_euk 15 175 IPR041738 GO:0005524|GO:0016887
Mal5g3212 1235 Coils Coil 786 834 - -
Mal5g3212 1235 SUPERFAMILY Tropomyosin 711 872 - -
Mal5g3212 1235 Gene3D - 834 997 - -
Mal5g3212 1235 Gene3D - 258 421 - -
Mal5g3212 1235 Coils Coil 267 329 - -
Mal5g3212 1235 Coils Coil 713 768 - -
Mal5g3212 1235 Coils Coil 843 863 - -
Mal5g3212 1235 Coils Coil 432 466 - -
Mal5g3212 1235 Coils Coil 221 244 - -
Mal5g3212 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1224 IPR027417 -
Mal5g3212 1235 SUPERFAMILY Smc hinge domain 512 699 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal5g3212 1235 Coils Coil 871 947 - -
Mal5g3212 1235 Coils Coil 1039 1076 - -
Mal5g3212 1235 SMART SMC_hinge_2 546 663 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Mal5g3212 1235 Gene3D - 509 612 - -
Mal5g3212 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 336 IPR027417 -
Mal5g3212 1235 Gene3D - 613 691 - -
Mal5g3212 1235 Gene3D - 15 222 IPR027417 -
Mal5g3212 1235 Gene3D - 1049 1227 IPR027417 -
Mal5g3212 1235 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 4 11 1213 - -
Mal5g3212 1235 CDD ABC_SMC4_euk 1127 1221 IPR041738 GO:0005524|GO:0016887
Mal5g3212 1235 Pfam RecF/RecN/SMC N terminal domain 16 1219 IPR003395 -
Mal5g3212 1235 PANTHER - 11 1213 - -
Mal5g3212 1235 Coils Coil 955 982 - -
Mal5g3212 1235 Coils Coil 344 364 - -
Mal5g3212 1235 PIRSF SMC 14 1232 IPR024704 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3212 Mal-Chr5 94343200 94355257 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3212 K06675 - gmx:100778712 2015.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3212 5 94343200 94355257 Mal5g3212 5 94343200 94355257 ECH