Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3185 ATGATCTGTAAGTACCTCTGTAAACGCTCATTGAGCCTTGAGTCCTGTCCTGACCCTGGTGAGCCCCCGGAGCCCAACTTACCTAAACTTTACATTAGCAAAAAAAAAAAAAAATCGGATTGCATGGAACCAGTATCAAAAAACCCTAGAACAACAAAATCTTCAAAATACCCATCAAAATCCAAAAACCCTAACAAAAATTCAACCTCAAATTCCAAACCCAACGAATTCCCATCTCATCTTGACACCCCAAACGTTTCATCAACTGCTCGTATCCTTTGCAATCTCCTAACCCGAACATCGCCACAGGACATCGATAACGCGTTGTCATCCTCCGGGATTCATCCTTCTGAAGAATGTGTTCATGAGGTTTTGAAACTTTCTTATAATTATCCGTCATCGGCCATCAAGCTCTTTAGGTGGGCTGGGCGTTTGAGAAAACACTCGGCCCACGCGTGGAACTTGATGGTTGATTTGCTGGGTCGGAATCAGCTTTTTGAACCTATGTGGGATGCTGTTAGGACTATGAAACAGGAAGGTGTGCTGTCATTGCCCACCTTTGTTTCGGTTTTTCAGAATTATTGTATGGCTGGTAGATTTAACGAGGCTGTTATGACTTTTGATGTGATGGAAAAGTATGATGTTGAGAAGAATGTTGTGGCGGTTAATTCGTTGCTTAGCGCGATTTGTAGGGAAGAGAATAAGACTGCTGTGGGTGTGGAGTTTTTAGAGAAGAAGGTTAAGGGGAAAGGGAATGTTGATTTGGATGGGGATAGTTTCGCGATATTGCTTGAAGGGTGGGAGAAGGAAGGGAATGCTGCTAAAGCTAAGAGTACTTTTGGTGAGATGGTGGTTCGTGTTGGTTGGAGTCAGGATAATGTAGCAGCTTACGATGCATTTTTGATGACTTTACTTCGGGCTTCGCAGTTTGATGAAGTTATGGGGTTTCTTAAAGTTTTGAAGGAACATGACTGCTTTCCAGGTTTGAAATTCTTTACCAATGCTCTTGATGTTTTTGTTAAGCGAAATGATACTGCACATGCCATCCCTTTGTGGGATGTCATGGTTGCTAGTGGATTGTTGCCTAACTTGATCATGTATAATGCTATGATTGGGTTGCTTTGCAACAATGGCGAGATTGATCACGCCTTTCGCCTGCTCGATGAGATGGTTCTCCATGGCGCTTTTCCTGACTCTTTGACCTATAACATGATTTTTGAGTGCTTGGTGAAGAACAAAAAGGTTCGTGAAACAGAGAGGTTCTTTGCCGAGATGATCAAGAATGAGTGGCTGCCCACTGCATCTAATTGTGCTGTCGCCATTGAAATGTTGTTTGATTGTGATGACCCTGATGCAGCACTTGAGATTTGGAATTACATTGTTGAAACTCATGTTGGGGTACTTGATGTGAGTGCAAATATGTTGCTCATTGGTCTATGTAAATTGAAAAGACTGTCAGAGGCTAGAAGGTTTGCTGAAGAAATGCTTGATAAAAGGATCATCATATATGATTCTACAATGAACAAGTTGAAGGAAGCATTCTATAAGGAGAGTAGAAGTGCAAGAGACAAATTTGATACTATATACAGGAGATGGAAAGCTCGTGTCAAGTTGTAA 1617 0.4181 MICKYLCKRSLSLESCPDPGEPPEPNLPKLYISKKKKKSDCMEPVSKNPRTTKSSKYPSKSKNPNKNSTSNSKPNEFPSHLDTPNVSSTARILCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKLSYNYPSSAIKLFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQNYCMAGRFNEAVMTFDVMEKYDVEKNVVAVNSLLSAICREENKTAVGVEFLEKKVKGKGNVDLDGDSFAILLEGWEKEGNAAKAKSTFGEMVVRVGWSQDNVAAYDAFLMTLLRASQFDEVMGFLKVLKEHDCFPGLKFFTNALDVFVKRNDTAHAIPLWDVMVASGLLPNLIMYNAMIGLLCNNGEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERFFAEMIKNEWLPTASNCAVAIEMLFDCDDPDAALEIWNYIVETHVGVLDVSANMLLIGLCKLKRLSEARRFAEEMLDKRIIIYDSTMNKLKEAFYKESRSARDKFDTIYRRWKARVKL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3185 538 Pfam PPR repeat 186 214 IPR002885 -
Mal5g3185 538 Pfam PPR repeat 470 499 IPR002885 -
Mal5g3185 538 MobiDBLite consensus disorder prediction 45 84 - -
Mal5g3185 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Mal5g3185 538 PANTHER OSJNBA0019D11.15 PROTEIN 63 535 - -
Mal5g3185 538 Gene3D Tetratricopeptide repeat domain 117 244 IPR011990 GO:0005515
Mal5g3185 538 Gene3D Tetratricopeptide repeat domain 413 533 IPR011990 GO:0005515
Mal5g3185 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Mal5g3185 538 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 63 535 - -
Mal5g3185 538 MobiDBLite consensus disorder prediction 12 84 - -
Mal5g3185 538 MobiDBLite consensus disorder prediction 30 44 - -
Mal5g3185 538 Gene3D Tetratricopeptide repeat domain 245 412 IPR011990 GO:0005515
Mal5g3185 538 Pfam PPR repeat family 362 411 IPR002885 -
Mal5g3185 538 TIGRFAM PPR: pentatricopeptide repeat domain 186 218 IPR002885 -
Mal5g3185 538 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Mal5g3185 538 TIGRFAM PPR: pentatricopeptide repeat domain 471 500 IPR002885 -
Mal5g3185 538 TIGRFAM PPR: pentatricopeptide repeat domain 401 433 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3185 Mal-Chr5 93338357 93340512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3185 147 530 Glycosyltransferase AT1G05670 22.222 1.21e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3185 - - gmx:100796114 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3185 5 93338357 93340512 Mal5g3185 5 93338357 93340512 ECH