Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3171 ATGCATTTTCCAATGGATTTCGCAAAACACATTACAACAAAACCTCTCATACTCTTCACACGCCCTTTAACCTGGATCACTTCCACCCTCCCCCGCCACCGTCACATTCCACCACCACAACCACCACCACCACCACCACAACCACCACTAACCACCCTCACTTCAATCCTCACACACAAAGTTCTAGATTCTTCCAAATTAAAAACCCTATTACCTAACCTAACTCCTCAAGAATTCGAACACTCCTTCTTCACTCATCACACCACCGTTAACCTCAAAACCACACTCGATTTCTTCCATTTCGCTTCGAAAAATTTCAAATTCCGTTTCACCGTTCGTTCTTACTGCATCTTAATTCGTTTGCTTCTAGCTTCAAATAATTTATCTCGAGCTAGGTTTAAGCTGAAAACGTTAATCGAAGGTAACGCGAAAACGCCGTTAAAGAATATTGACGGTAGGTTAAGCGAAATCGCTTCGTCGTTTTTGGAATTGAGTGATCGAAGTTATGGTGAATTTGATTTGTTGATTCATATTTTGTGTTCGCAGTTTCAGCATTTAGGGTTTCGTTGGGCTTTTGATGTTTTTATGTTGTTTACTAGTAAGGGTGTTTTTCCTTCGCTGAAAAGTTGTAACTTTTTGATGAGTTCTTTGGTGAAAAGTAATGAGCTTCATAAGAGTTTTAGGGTCTTTGACGCGGTGTGTCGTGGTGGTGTTGTGATTGATGTTTATACGTATGCAATTGCGATTAACGTGTTTTGTAAAGGTGGGAAGGTTGATGAGGCTGTTGGGTTGTTTTTGAAAATGGAGGAGGAAGGTGTTTTGCCGAATGTGGTTACTTACAATAACTTGATTGATGGGTTATGTAAGAGTGGAAGGTTAGAAGAGGCTTTTAGGTTTAAAAACAAGATGGTTGAGAATAAAGTGAACCCTAGTTTAGTTACTTATGGGATTCTTGTGAATGGTTTGATGAAGTTTGAGAAATTCGATGAGGTGAATTCGGTTTTGGAAGAAATGTATAGCAAGGGTTTTTCTCCGAATGAGTTTATTTTTAATGCAATTATTGATGGGTATAGCAGGAAAGGGAATATGGAGGATGCATCGAGGGTTAGGGATGATATGATGTTGAAGGGATTGAAACCAAATGCTGTTACTTTTAATACTCTTTTACAGGGTTTTTGTAGGAGCAATCAAATGGAGCGAGCTAAGGAAGTTTTAGAGTACTTGTTATCAAAAGGTTTGTCTGTTAACGAGGATGCGTGTTCTTATGTGCTTCACTTGTTATGCAAGAGTTCCAAGTTTGATTCGGCCTTGAAAATTGTTAAGGATTTGTTGTTGAGGAACATTAAGGTTAATGATAGCTTGCTAACTTTGTTAGTTTGTGGACTTTGTAAATGTGAAAAACATTTGGAGGCAATTGACCTTTGGTTTAGACTAGCAGATAAAAAAGGGTTTGCAGCGAATACAGCGACCTCAAATGGGCTTCTCTATGGACTTTGTGAAAGGATGAACATGGAAGAGGTCTTTGCGGTACATAAAGAAATGGTGGAGAGAGGTTTGGTGCTTGATGGTATTTCATACAACACACTTATTTTTGGCTGTTGTAAATCGGGTAAAATTGAGGAAGCTTTCAAGCTTAAGGAAGAGATGGTGAATCAAGGATTCAAACCTGATACTTATACCTACAATTTCCTAATGAAAGGGTTAGCTGATAAGGGTAAAATAGATGATGTTGATAGGGTTTTGCATGAAGCCGTGGAACAGGGGGTGGTTCCAAATATCTACACATATGCACTAATGTTGGAAGGATATTGTAATGCTGAAAAGATTGATAATGCTGTGAGCTTGTTCAACAAGTTAGTTTATAACAAAGTAGAACTCAGTTCTGTTGTTTATAACATACTTATTGCAGCCCATAGTAAAGCTGGGAATTTTATGGAAGCCTTCAAACTTCGCGATGCTATGAAAAGTAGTGACATTCCTCCTACGGTTGCCACATATTCTTCTATAATACATGGAATGTGCTGTAATGGCCTTGTTGAGGAAGCAAAGGAAATTTTTGAGGAAATGAGAAATGAAGGATTGATGCCAAATGTGTTTTGTTATACTGCTCTAATTGGTGGTTACTGCAAGTTAGGTCAGATGGATCAAATAGAGAGTATCTTACAGGAAATGACATCAAAATGTATACAGCCTAATAAAATTACCTACACTATTATGATTGATGGTTATTGTAAAATGGGAAATACGGAAGAAGCGACTAAGCTTTTAAATGAGATGATAGCAAATGGAATATCACCAGATACTGTTACTTATACTGTATTGCAAAAAGGATCTTGCAAGGAAAAAGAGCTTGAAGAAACTCTTCAAGGCGATACAGCAGTACCCTCAGAAGAAATAACATACACCACATTGGTTGACAAGTTGCATCCACATTCAGATGCAGCACTTAGTAACCGTGAATAA 2463 0.3808 MHFPMDFAKHITTKPLILFTRPLTWITSTLPRHRHIPPPQPPPPPPQPPLTTLTSILTHKVLDSSKLKTLLPNLTPQEFEHSFFTHHTTVNLKTTLDFFHFASKNFKFRFTVRSYCILIRLLLASNNLSRARFKLKTLIEGNAKTPLKNIDGRLSEIASSFLELSDRSYGEFDLLIHILCSQFQHLGFRWAFDVFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAVCRGGVVIDVYTYAIAINVFCKGGKVDEAVGLFLKMEEEGVLPNVVTYNNLIDGLCKSGRLEEAFRFKNKMVENKVNPSLVTYGILVNGLMKFEKFDEVNSVLEEMYSKGFSPNEFIFNAIIDGYSRKGNMEDASRVRDDMMLKGLKPNAVTFNTLLQGFCRSNQMERAKEVLEYLLSKGLSVNEDACSYVLHLLCKSSKFDSALKIVKDLLLRNIKVNDSLLTLLVCGLCKCEKHLEAIDLWFRLADKKGFAANTATSNGLLYGLCERMNMEEVFAVHKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEEMVNQGFKPDTYTYNFLMKGLADKGKIDDVDRVLHEAVEQGVVPNIYTYALMLEGYCNAEKIDNAVSLFNKLVYNKVELSSVVYNILIAAHSKAGNFMEAFKLRDAMKSSDIPPTVATYSSIIHGMCCNGLVEEAKEIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSKCIQPNKITYTIMIDGYCKMGNTEEATKLLNEMIANGISPDTVTYTVLQKGSCKEKELEETLQGDTAVPSEEITYTTLVDKLHPHSDAALSNRE* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Mal5g3171 820 Pfam PPR repeat family 275 324 IPR002885 -
Mal5g3171 820 Pfam PPR repeat family 627 674 IPR002885 -
Mal5g3171 820 Pfam PPR repeat family 345 394 IPR002885 -
Mal5g3171 820 Pfam PPR repeat family 524 569 IPR002885 -
Mal5g3171 820 Pfam PPR repeat family 696 745 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Mal5g3171 820 Pfam PPR repeat 490 519 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 732 766 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Mal5g3171 820 Gene3D Tetratricopeptide repeat domain 377 466 IPR011990 GO:0005515
Mal5g3171 820 Gene3D Tetratricopeptide repeat domain 574 677 IPR011990 GO:0005515
Mal5g3171 820 Gene3D Tetratricopeptide repeat domain 467 573 IPR011990 GO:0005515
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Mal5g3171 820 Gene3D Tetratricopeptide repeat domain 678 819 IPR011990 GO:0005515
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 734 768 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 383 417 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 629 662 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 524 558 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 699 732 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 492 522 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 665 698 IPR002885 -
Mal5g3171 820 TIGRFAM PPR: pentatricopeptide repeat domain 559 593 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Mal5g3171 820 Gene3D Tetratricopeptide repeat domain 84 300 IPR011990 GO:0005515
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Mal5g3171 820 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 18 789 - -
Mal5g3171 820 Pfam PPR repeat 588 618 IPR002885 -
Mal5g3171 820 Pfam PPR repeat 237 269 IPR002885 -
Mal5g3171 820 Gene3D Tetratricopeptide repeat domain 301 376 IPR011990 GO:0005515
Mal5g3171 820 SUPERFAMILY HCP-like 533 654 - -
Mal5g3171 820 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Mal5g3171 820 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 789 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3171 537 818 Glycosyltransferase AT1G05670 30.208 2.68e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3171 - - gmx:100819570 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3171 5 92649524 92651986 Mal5g3171 5 92649524 92651986 ECH