LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g2878	ATGGCTAGGGTTTATATTGGGAATTTGGACCCTCGAGTCACTGAGAGAGAACTTGAAGATGAATTTCGTTTGTATGGTGTTCTTCGCAGTGTTTGGGTTGCTCGCAGACCACCAGGATATGCATTTATTGAATTTGATGATAAGAGGGATGCTCTTGATGCAATTCATGCCTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGAGTGGAGGAGGAGGCCGTGGTGGTGGACGTGGCGGACGTGGAGGGGATGACCTGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCATTCACGTGGTGGTTCACGAGGCCTAGGAAATGGAAGGAGACGAAGTCCTAGTCCTTATTATCGGCGTCGTGGAAGTCCAAGTTATGGTTATGGCCGCAGGAGTTATAGCCCACGTGGGAGAAGATCCCCAAGAAGACATAGCATAACACCTCCTCGTGGTCGTAGCTACAGCAGATCCCCTCCTCCATACCGTTATTCTCGTCGTGATTCACCTTATGCCAATGGAGATTAA	552	0.4855	MARVYIGNLDPRVTERELEDEFRLYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDGKNGWRVELSHNSKSGGGGRGGGRGGRGGDDLKCYECGEPGHFARECHSRGGSRGLGNGRRRSPSPYYRRRGSPSYGYGRRSYSPRGRRSPRRHSITPPRGRSYSRSPPPYRYSRRDSPYANGD*	184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g2878	183	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Mal5g2878	183	MobiDBLite	consensus disorder prediction	105	183	-	-
	Mal5g2878	183	MobiDBLite	consensus disorder prediction	67	90	-	-
	Mal5g2878	183	Gene3D	-	2	69	IPR012677	-
	Mal5g2878	183	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	181	-	-
	Mal5g2878	183	ProSiteProfiles	Zinc finger CCHC-type profile.	92	106	IPR001878	GO:0003676\|GO:0008270
	Mal5g2878	183	SMART	c2hcfinal6	92	108	IPR001878	GO:0003676\|GO:0008270
	Mal5g2878	183	SUPERFAMILY	RNA-binding domain, RBD	3	88	IPR035979	GO:0003676
	Mal5g2878	183	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Mal5g2878	183	Pfam	Zinc knuckle	92	106	IPR001878	GO:0003676\|GO:0008270
	Mal5g2878	183	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1	2	181	-	-
	Mal5g2878	183	CDD	RRM_SRSF3_like	3	71	-	-
	Mal5g2878	183	SUPERFAMILY	Retrovirus zinc finger-like domains	84	109	IPR036875	GO:0003676\|GO:0008270
	Mal5g2878	183	Gene3D	-	88	157	-	-
	Mal5g2878	183	SMART	rrm1_1	3	69	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g2878	Mal-Chr5	85747280	85750066	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g2878	K12896		-	ming:122079767	214.927

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g2878	5	85747280	85750066	Mal5g2878	5	85747280	85750066	ECH