Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2823 ATGGACAAATTCTTCTTGGTTTCTTTACTTGGTTTGCTGATAGTGGCGAATGGAGTTTCAGAGAGCATGATGTGTGACAACAACTTTGGCATGCTGGAAGAACTAAACAACTTCGACACGGAAGAAGATTATCAGGTAGAAGAACTTTCTGACATCCCTTCATGGACAAGCGAGCGTGGCGGAAAAGTTCTTGTCAATATTGATAGCTTTGGTGCTGCAGGAAATGGAGAATCTGATGATACTGAGGCTCTTCAAAAAGCATGGGGTGTTGCTTGTTCTACACCAAAATCTGTTCTATTAGTTCCAAAAGGACGCAGTTACCTTGTTAATGCAACGAAATTCATAGGGCCTTGTAAAGACAATCTAATCATCCAGATTGATGGAACACTGGTTGCTCCGGAAGATCCTAAGAACTGGGATCCAAAACTTCCACGCGTTTGGCTCGATTTTTCTAAATTGAAGAAAGTTGTTTTCCAAGGCTCTGGAGTTATTGACGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGACTAATCCTTGCAAAGGTGCACCAACGGCACTAACCATTGATACAAGTTCTTCTATAAGGGTTAAAGGCCTAACTATCCAGAATAGCCAACAGATGCATTTTACAATATCGCGATGCGATTCTGTTCGAATTTTAGGAGTTAAAGTGTCTTCACCGGGAGACAGTCCAAACACTGATGGAATTCATATTAGTGAATCAACAAATGTTATAGTCCAAGACTGCAAAATTGGAACAGGTGATGATTGCATTTCAATAGTGAATGCTAGTTCTAATATCAAAATGAAGAGAATTTTTTGTGGACCGGGACATGGAATCAGCATTGGAAGTCTTGGTAAAGATAACTCAACTGGTGTAGTCACGAAAGTGATTTTGGATACAGCATTACTAAAGGGGACTACCAATGGTCTCAGAATCAAGACTTGGCAGGGAGGTGCTGGATATGTTAAAGGGGTACGCTTTCAAAATGTGAGGGTGGAAAATGTATCAAACCCTATTCTTATAGATCAATTTTACTGTGATTCTCCAACCTCATGTCAAAACCAGTCATCAGCTTTGGAGATAAGTGAGATAATGTACCAAAATGTAAGTGGGACAACAAATAGTGCTAAGGCCATTAAATTTGACTGCAGTGACACCGTTCCATGCAGCAACTTAGTCCTTAGCAATGTTGATTTGGAGAAACAAGATGGCACAGTTGAAACATATTGCCATTCAGCTCAAGGATTTGGATATGGTGTGGTTCATCCTTCTGCTGAATGCCTTAATTCCAGTGATAAAACCTCTCAAGTTGATGATGAATCACAATCTATTACTTCTGAGGAGGATTATATTCGTCACACCGAACTATAA 1389 0.4017 MDKFFLVSLLGLLIVANGVSESMMCDNNFGMLEELNNFDTEEDYQVEELSDIPSWTSERGGKVLVNIDSFGAAGNGESDDTEALQKAWGVACSTPKSVLLVPKGRSYLVNATKFIGPCKDNLIIQIDGTLVAPEDPKNWDPKLPRVWLDFSKLKKVVFQGSGVIDGSGSKWWAASCKKNKTNPCKGAPTALTIDTSSSIRVKGLTIQNSQQMHFTISRCDSVRILGVKVSSPGDSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGVVTKVILDTALLKGTTNGLRIKTWQGGAGYVKGVRFQNVRVENVSNPILIDQFYCDSPTSCQNQSSALEISEIMYQNVSGTTNSAKAIKFDCSDTVPCSNLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSAECLNSSDKTSQVDDESQSITSEEDYIRHTEL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2823 462 SUPERFAMILY Pectin lyase-like 63 434 IPR011050 -
Mal5g2823 462 Pfam Glycosyl hydrolases family 28 96 416 IPR000743 GO:0004650|GO:0005975
Mal5g2823 462 SMART pbh1 269 289 IPR006626 -
Mal5g2823 462 SMART pbh1 246 267 IPR006626 -
Mal5g2823 462 SMART pbh1 219 245 IPR006626 -
Mal5g2823 462 SMART pbh1 328 349 IPR006626 -
Mal5g2823 462 PANTHER - 2 445 - -
Mal5g2823 462 Gene3D - 54 461 IPR012334 -
Mal5g2823 462 ProSitePatterns Polygalacturonase active site. 276 289 IPR000743 GO:0004650|GO:0005975
Mal5g2823 462 MobiDBLite consensus disorder prediction 435 462 - -
Mal5g2823 462 PANTHER BNAA08G20470D PROTEIN 2 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2823 Mal-Chr5 83930632 83934734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2823 24 462 Glycoside Hydrolase AT1G23460 69.318 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2823 - - mtr:MTR_8g065030 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2823 5 83930632 83934734 Mal5g2823 5 83930632 83934734 ECH