Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2822 ATGAATCAAACAAACATGTACAAACAATTACAGAGTAAATGTTGTCGAAACCTCAAAAACATCTTCATCAGACCCATAACAACGACAACTACACCAATGTTGCATAGTGACTATGTCTATGTTAACAATCGCCAAATCAACGCTTTCATAAAATCAAAAAACCCAAACTCAGCACTTGCGTTGTTCAACAACATGCAAATCCGTGACACTGTCACCTACAATTTGATCATTTCATCTTCTTGCTTACCACCCAAGAAAGCTTTTTGTCTATATTCCGAAATGGGTTTGTTCGGCATAACAGAAACCGCAACTACGTTTGCTTCTGTTGTATCTCTTTGTACCAATAATGGGTTTTGGAGAGAAGGTTCTCAGGTTCATTGTAGGGTTGTAAAGTTTGGATTTTTGAATAATGTGTTTGTTGGTGGTGCTCTTGTTGGGTTTTATATGGATTTTGGGCTTGATGGGGTTGCACTGAAGTTGTTTGATGAGTTGTCTGAGAGAAATTTGGTTGTGTGGAATGTGATGTTTCGTGGGTTTTGTGAAATGGGTTGTGTGGAAGTGGAAGAGTTGCTTGGGTTTTACGCAAGGATGTGTGTTGAAGGTGTGGAACCAAGTGGGGTTACTTTTTGTTATTTGCTTAGGTGGTGTAGTAGTAAGAGAAGGTTTCATGAAGGGAAGATGATTCATAGCTGTGTTATGAAGATGGGTTTTGTGGAATCTAATGTTTTTGTTGCTAATGCTTTGGTGGATTTTTATTCTTCATGTGGGTGTTTTGTTGGTGCAAGGAAGTGTTTTGAAGGGATAAAAGTTGAGGATGTTATTTCATGGAACTCTTTGGTTTCTGTTTATGCTGACCATGATTTGGTAATTGATGCTTTGGATTTTTTTAATTTTATGCAAATGTGGGGACATAGGCCGTCGATTCGTTCGTTTGTCGGTTTTTTGAATTTGTGTAGTAGAAATAAGGAGATTGGTTTGGGGAAGCAGATTCATTGTTGTGTTGTGAAATTTGGTTTTGATGAAAGGAGTGTGTATGTTCAATCTGCTTTGATTGATATGTATGGAAAATGTTTGGATATTGAGAGTTCTGTGAATGTATTTGAACATCTTCCTAAGATGACTTTGGAGTGTTGTAACTCATTGATGACTTCTTTGTCTCATTGTGGTTGCGTTGAAGATGTGGTGGAATTGTTTGGTTTAATGGTTGATGAAGGTCTTATGCCAGATGAAGTAACCGTCTCGACGACACTGAAGGCATTATCGGTGTCTGCTTCGGCAAGCTTCACTAGCTCTCAGTTAGTGCATTGTTTTGCATTGAAATCTGGTGTTGAAAGAGACACTGCGGTTGCATGTTCCCTTATGGATGCATATTCAAGATGTGGACATGTGGAACTTTCTAATCAGATTTTTGAGACTATTTCAACACCAAATGATATTTGCTTCACTTCTATGATCAATGGTTATGCCCGAAACGGGATGGGGAAGGAAGGACTTTCGTTGCTTCATGCTATGATTGAGAAAGGCGTAAAACCAGACGAAGTTACCTTCCTATGTGCACTAACGGGGTGTAGTCACACCGGACTGATCGAAGAAGGAAGAATACTCTTTAACTCAATGAAATCTCTTTATGATGTTCACCCAGATCGGCGACATTTTTCATGCATGGTGGATCTTTTATCCCGTGCAGGATTTCTACATGAAGCCGAAGAGTTCCTTCTAAAGGTACAAGGAAAAGGAGACTGTTTCATGTGGAGCTCTTTGCTCCAAAGTTGCAGGGTTTACAAGAATGAAGAAGTTGGTATAAGAGCAGCACAAATGTTGGTTGATCTAGACCCAAATGATCCTGCAGTGTGGTTGCAAGCTTCAAATTTTTATGCTGAGATAGGAAAATTCGACGAATCAAGACAACTAAGAGACGTTGCTCTAGCAAGGAAGATATCTAGGGAGATTGGCTGTAGTTTAATTGAGATAAGAAAGTGA 1980 0.3919 MNQTNMYKQLQSKCCRNLKNIFIRPITTTTTPMLHSDYVYVNNRQINAFIKSKNPNSALALFNNMQIRDTVTYNLIISSSCLPPKKAFCLYSEMGLFGITETATTFASVVSLCTNNGFWREGSQVHCRVVKFGFLNNVFVGGALVGFYMDFGLDGVALKLFDELSERNLVVWNVMFRGFCEMGCVEVEELLGFYARMCVEGVEPSGVTFCYLLRWCSSKRRFHEGKMIHSCVMKMGFVESNVFVANALVDFYSSCGCFVGARKCFEGIKVEDVISWNSLVSVYADHDLVIDALDFFNFMQMWGHRPSIRSFVGFLNLCSRNKEIGLGKQIHCCVVKFGFDERSVYVQSALIDMYGKCLDIESSVNVFEHLPKMTLECCNSLMTSLSHCGCVEDVVELFGLMVDEGLMPDEVTVSTTLKALSVSASASFTSSQLVHCFALKSGVERDTAVACSLMDAYSRCGHVELSNQIFETISTPNDICFTSMINGYARNGMGKEGLSLLHAMIEKGVKPDEVTFLCALTGCSHTGLIEEGRILFNSMKSLYDVHPDRRHFSCMVDLLSRAGFLHEAEEFLLKVQGKGDCFMWSSLLQSCRVYKNEEVGIRAAQMLVDLDPNDPAVWLQASNFYAEIGKFDESRQLRDVALARKISREIGCSLIEIRK* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2822 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Mal5g2822 659 Pfam PPR repeat 552 579 IPR002885 -
Mal5g2822 659 Pfam PPR repeat 274 303 IPR002885 -
Mal5g2822 659 Pfam PPR repeat 377 406 IPR002885 -
Mal5g2822 659 Pfam PPR repeat 170 186 IPR002885 -
Mal5g2822 659 Pfam PPR repeat family 476 524 IPR002885 -
Mal5g2822 659 Gene3D Tetratricopeptide repeat domain 189 337 IPR011990 GO:0005515
Mal5g2822 659 Gene3D Tetratricopeptide repeat domain 474 653 IPR011990 GO:0005515
Mal5g2822 659 Gene3D Tetratricopeptide repeat domain 41 188 IPR011990 GO:0005515
Mal5g2822 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 204 IPR002885 -
Mal5g2822 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Mal5g2822 659 Gene3D Tetratricopeptide repeat domain 338 432 IPR011990 GO:0005515
Mal5g2822 659 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Mal5g2822 659 TIGRFAM PPR: pentatricopeptide repeat domain 479 513 IPR002885 -
Mal5g2822 659 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Mal5g2822 659 PANTHER - 324 657 - -
Mal5g2822 659 PANTHER - 11 321 - -
Mal5g2822 659 PANTHER - 191 423 - -
Mal5g2822 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2822 Mal-Chr5 83928001 83929980 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2822 43 657 Glycoside Hydrolase AT3G49170 30.428 2.74e-84 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2822 - - lja:Lj0g3v0314629.1 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2822 5 83928001 83929980 Mal5g2822 5 83928001 83929980 ECH