Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1623 ATGTTACACTCATTACCACCACCTTCCAAATTCCTCAATGTCCAGTTATTACACCGTTCATTCAAAATATGTCTCAAACTATTCCACTCACTCAAACAAAAACATGAACACAACCTGTTCGACAAAATTCCCCAACCAAATGCTTCCTCGATTAACCGATCCATGCTTAACTTCTTGCGCAAAAATCTTCCCTTTCAAGCTCTTTCCATATTCAAGAACCACAACCAGTTTCCTTTTCTTCAGAATATCGACGAGGTAACACTTGCCTTGTCGTTCAAGGCTTGTCGGGGTGAGTTTAATTTAGGTTGCCAAATTCATGGATTAGTTGTAACTACCGGGTTTGTTTCGTCTGTTACTGTGTCGAATTCATTGATGAAAATGTATTGTAAAGCTGGGGAGTTTGATCGTGCTTTGCGTGTTTTTGAGGGTTTGAGTTGTCCTGATATTGTTTCCTGGAATACTATTCTTTCTGGGTTTGAGAAGAGTGGTGATGCTTTGAATTTTTCATGTTTTATGCATTTGAATGGGGTGGTTTTTGATCCTGTGACGTATACTACTGCGCTTTCGTTTTGTTGGGATAGGGATGGGGATGATCATGGGTTTTTGTTTGGGTTGCAATTGCATTCTCTTGTGGTTAAATGTGGATTTGGTTGTGAAGTTTTTGTTGGGAATGCACTTGTGACAATGTATTCGAGGTGGGGGAGATTAGATGAGGCTGGGAGAGTTTTTGATGAGATGACTATAAGAGATTTGGTTTCTTGGAATGCGATGCTTTCGGGGTTTGCTCAAGAAGGGGAGTGTTATGGGTTGGAAGCTGTTTTGTTGTTTGTCAATATGGTGAGAGAAAGGATGTTGCTTGACCATGTTTCGTTAATCGGTGCTGTTTCCGCTTGTGGTTATATGAGAAACTTGGAGCTAGGGAAGCAGATTCACAGTTTGGCTCAAAAAATGGGTTATGGAACACATGTTGCATTTTGCAATGTTTTGATTTCGACTTATTCAAAATGCAAGGTTCTTAGAGATGCGAAAGCGGTTTTTCAGGACATGAGTGCTCGAAATGTAGTGTCTTGGACGACCATGATTTCTATTGATGAAGAGAATGTGGTGTCACTCTTTAATGCTATGAGAGTTGATGGTGTGTATCCAAATGATGTTACTTTTATAGGATTATTGCATGCTATAACAATTAGGAATATGGTGAAAGAAGGTCTAATGGTTCATGGGTTATGCATAAAAAGTTGCTTTTCATCAGAACAAAATGTCTCTAATAGCCTAATTACCATGTATGCCAAGTTTGAGTCCATTCAAGAATCAAAGAAGATTTTTGAGGAGCTTAAATATCAAGGAACAATATCATGGAATGCATTAATTTCAGGGTATGCTCAAAACGGTTTGTGTAAAGAAGCTTTCCTTACATTTTTATCTGCAATAAAGGAGATGAAGCCCAACCAATACACATTTGGTAGTGTGTTAAATGCCATTGCTGCAGCTGAGGATTTATCTTTGAAACATGGGCAACGTTGTCATTCTCACTTGATCAAACTTGGTTTCAACACGGACCCATTTGTTGCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAAACATTGGCGAGTCTCAAAGAGTATTTAACGAGACACCCGAAAAAACCCAGTATTCTTTGACAGGAATGATATCTGCCTATGCCCGCCATGGAGACTATGAGTCGGTGATGAGTTTATACAAGGATATTGAGAGGGAAGGAATCAATCTTGATTCCATCACTTTCCTATCTGTTTTAGCTGCATGTTGTAGAAAGGGAATGGTTGATGTAGGCCATAGAATATTTGACTCTATGGTGAAAAAACATTCAATTGAACCAATCCCTGAGCATTATTCAATTATGGTGGACATGTTGGGCCGTGTGGGACGGCTAGGTGAGGCGGAAGAGTTGATGCATCAGATTCCAGGCGGACCTGGACTGTCAGTGTTGCAAAGCTTGCTTGGGTCTTGTAAATTACATGGGAATGTGGAGATGGCAGAGAGGGTTTTTGATAGTTTGATACAAATGGATCCTGCAAGTTCAGGTCCATATGTCTTGATGGCAAACTTGTATGCTGAGAAAGGAGAGTGGGAGAAAGTTGCTGAAGTGCGAAAAGGGATGAGAGGGTGGGGGGTAAAGAAGGAAGTGGGATTTAGTTGGGTGGATGTTGCTAATGTTGATTCCTTGCATTTGCATGGTTTCTCATCTGGGGATAAGTCACACCCAGAGTCTGAGACTATTTATAGAATGGCAGAGTTTCTCGGATTGCAAATGATATTTTCAAAAGAGAGTAGAGTGAAGGAAGGTGATTGGTATCGAAAGTCTGAACTGATGAGCCATGGATAG 2370 0.4059 MLHSLPPPSKFLNVQLLHRSFKICLKLFHSLKQKHEHNLFDKIPQPNASSINRSMLNFLRKNLPFQALSIFKNHNQFPFLQNIDEVTLALSFKACRGEFNLGCQIHGLVVTTGFVSSVTVSNSLMKMYCKAGEFDRALRVFEGLSCPDIVSWNTILSGFEKSGDALNFSCFMHLNGVVFDPVTYTTALSFCWDRDGDDHGFLFGLQLHSLVVKCGFGCEVFVGNALVTMYSRWGRLDEAGRVFDEMTIRDLVSWNAMLSGFAQEGECYGLEAVLLFVNMVRERMLLDHVSLIGAVSACGYMRNLELGKQIHSLAQKMGYGTHVAFCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTMISIDEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHGLCIKSCFSSEQNVSNSLITMYAKFESIQESKKIFEELKYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEMKPNQYTFGSVLNAIAAAEDLSLKHGQRCHSHLIKLGFNTDPFVAGALLDMYGKRGNIGESQRVFNETPEKTQYSLTGMISAYARHGDYESVMSLYKDIEREGINLDSITFLSVLAACCRKGMVDVGHRIFDSMVKKHSIEPIPEHYSIMVDMLGRVGRLGEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVFDSLIQMDPASSGPYVLMANLYAEKGEWEKVAEVRKGMRGWGVKKEVGFSWVDVANVDSLHLHGFSSGDKSHPESETIYRMAEFLGLQMIFSKESRVKEGDWYRKSELMSHG* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1623 789 Gene3D Tetratricopeptide repeat domain 364 503 IPR011990 GO:0005515
Mal5g1623 789 Gene3D Tetratricopeptide repeat domain 18 195 IPR011990 GO:0005515
Mal5g1623 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 621 IPR002885 -
Mal5g1623 789 PANTHER OS07G0578800 PROTEIN-RELATED 564 775 IPR045215 GO:0003723|GO:0009451
Mal5g1623 789 PANTHER OS07G0578800 PROTEIN-RELATED 30 477 IPR045215 GO:0003723|GO:0009451
Mal5g1623 789 TIGRFAM PPR: pentatricopeptide repeat domain 224 250 IPR002885 -
Mal5g1623 789 TIGRFAM PPR: pentatricopeptide repeat domain 326 355 IPR002885 -
Mal5g1623 789 TIGRFAM PPR: pentatricopeptide repeat domain 554 586 IPR002885 -
Mal5g1623 789 TIGRFAM PPR: pentatricopeptide repeat domain 122 142 IPR002885 -
Mal5g1623 789 TIGRFAM PPR: pentatricopeptide repeat domain 588 621 IPR002885 -
Mal5g1623 789 Gene3D Tetratricopeptide repeat domain 606 738 IPR011990 GO:0005515
Mal5g1623 789 Gene3D Tetratricopeptide repeat domain 196 317 IPR011990 GO:0005515
Mal5g1623 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Mal5g1623 789 PANTHER OS07G0670000 PROTEIN 30 477 - -
Mal5g1623 789 Pfam PPR repeat family 556 599 IPR002885 -
Mal5g1623 789 PANTHER OS07G0578800 PROTEIN-RELATED 480 575 IPR045215 GO:0003723|GO:0009451
Mal5g1623 789 Pfam PPR repeat 252 267 IPR002885 -
Mal5g1623 789 Pfam PPR repeat 122 142 IPR002885 -
Mal5g1623 789 Pfam PPR repeat 326 353 IPR002885 -
Mal5g1623 789 Pfam PPR repeat 423 449 IPR002885 -
Mal5g1623 789 Pfam PPR repeat 625 648 IPR002885 -
Mal5g1623 789 Pfam PPR repeat 224 247 IPR002885 -
Mal5g1623 789 Pfam PPR repeat 451 473 IPR002885 -
Mal5g1623 789 Pfam E motif 668 730 IPR046848 -
Mal5g1623 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Mal5g1623 789 Gene3D Tetratricopeptide repeat domain 507 605 IPR011990 GO:0005515
Mal5g1623 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 286 IPR002885 -
Mal5g1623 789 PANTHER OS07G0670000 PROTEIN 480 575 - -
Mal5g1623 789 PANTHER OS07G0670000 PROTEIN 564 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1623 Mal-Chr5 31706611 31708980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1623 80 756 Glycoside Hydrolase AT3G49170 31.098 8.13e-104 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1623 - - cam:101513383 1320.06