LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1474	ATGGCTACCACCACCTCCGCTTCATTCTCCCGCTTCTCCATTCCTCCAAAACCACCCTCCCAACCACAATTCCTCCTCTTCACCTCCCCATTTCAAACCAAACCCCCCTCATCTCGAACCCGGTTCACATGCTCCGCCGGTGAAGCCGGGTTATTCACAAAACTCGGCCGGTTACTAAAAGAAAAAGCAAAAAGCGATGTAGAGAAACTATTCTCTGGTTTCTCGAAAACTCGGAATAATCTCTCCGTCATTGATGAACTTCTTCTCTATTGGAATCTCTCTGATACCGATAGAGTTCTTGATGAACTTGAAGAGGCTTTATTAGTGTCTGATTTTGGACCAAAAATTACTATTAAGATAGTGGAGAATTTAAGGGAGGATATACTTTCTGGGAAGCTTAAGTCAGGGAGTGAAATTAAGGAAGCATTGAAGAAAAACGTTTTGGATTTGTTAAGCAACAAGGGGAGTAAAACTGAACTTCAACTTGGATTTAGGAAACCAGCCGTAATAATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGGAGGTGCTAAGATATTGTTGGCAGCTGGTGATACATTCAGAGCAGCTGCTAGTGATCAGCTAGAAATATGGGCTGAAAGAACTGGGTGTGAGATTGTTGTGGCTGAATCAGAGAAAGCCAAAGCATCGGCAGTGCTTTCACAGGCTGTAAAAAGAGGAAAAGAGCTAGGTTATGATATTGTACTATGTGATACATCTGGACGTTTGCACACCAATTACAGGCTAATGGAAGAGTTAATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGCTGCTGGTGCACCCAATGAGATCCTACTGGTTCTGGATGGGACTACTGGCTTGAATATGTTGCCACAAGCCAGAGAATTCAATGAAGTAGTGGGTGTTACTGGTTTAATTTTGACAAAACTGGATGGCTCTGCAAGAGGTGGCTGTGTGGTAAGTGTGGTTGATGAGCTTGGAATCCCTGTCAAATTTGTGGGTGTTGGTGAAGGTGTGGAAGACCTTCAACCCTTTGATGCCGAGGCCTTTGTCAATGCCATTTTTTTGTAG	1110	0.4315	MATTTSASFSRFSIPPKPPSQPQFLLFTSPFQTKPPSSRTRFTCSAGEAGLFTKLGRLLKEKAKSDVEKLFSGFSKTRNNLSVIDELLLYWNLSDTDRVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGSEIKEALKKNVLDLLSNKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASAVLSQAVKRGKELGYDIVLCDTSGRLHTNYRLMEELISCKKAVAKVAAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFL*	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1474	369	Pfam	SRP54-type protein, helical bundle domain	96	145	IPR013822	GO:0005525\|GO:0006614
	Mal5g1474	369	SMART	SRP54_3	167	369	IPR000897	GO:0005525\|GO:0006614
	Mal5g1474	369	Gene3D	-	57	158	IPR042101	-
	Mal5g1474	369	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	164	367	IPR027417	-
	Mal5g1474	369	PANTHER	BNAA04G26420D PROTEIN	38	368	-	-
	Mal5g1474	369	SUPERFAMILY	Domain of the SRP/SRP receptor G-proteins	67	144	IPR036225	-
	Mal5g1474	369	CDD	FtsY	168	367	-	-
	Mal5g1474	369	SMART	SRP54_N_2	70	151	IPR013822	GO:0005525\|GO:0006614
	Mal5g1474	369	TIGRFAM	ftsY: signal recognition particle-docking protein FtsY	96	368	IPR004390	GO:0006614
	Mal5g1474	369	Pfam	SRP54-type protein, GTPase domain	167	368	IPR000897	GO:0005525\|GO:0006614
	Mal5g1474	369	PANTHER	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	38	368	-	-
	Mal5g1474	369	SMART	AAA_5	166	339	IPR003593	-
	Mal5g1474	369	Gene3D	-	159	368	IPR027417	-
	Mal5g1474	369	ProSitePatterns	SRP54-type proteins GTP-binding domain signature.	342	355	IPR000897	GO:0005525\|GO:0006614

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1474	Mal-Chr5	28314732	28318705	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g1474	K03110		-	gmx:100791073	617.461

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g1474	5	28314732	28318705	Mal5g1474	5	28314732	28318705	ECH