LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1328	ATGTTCTTCAAGCTCTATTTCAAAAAGCACTTCCCTTTCCCTCCATTCCCTTTCTCATTCTTCACAAAATGCTTCTGTTTCTCTTCTCACCAACCCCATCCATGGAGCTTCTCAAGCAGAGTCAGAGCTTCCATGCCAAATCCAAATCAAACCCATTTCAATGACCCTAACACTGTTCATTTGTTTTGTTCCAACGCCCTCAAAATCTCGGCCAAAAAGGGCTATCTTCCTGAAGGAAAACAGCTACATGCCCATTTGATAAAGTTTGGATTTTGTCAAGTTCTTTCCTTACAAAATCAGATTTTGAGTGTTTATCTTAAATGTCAAGAGACTCGAGATGCAGAGAAACTGTTTGATGGATTGCCTGTTAGAAATGTTGTTTCGTGGAATATTATGATTCGCGGTATTGTTGGATCATGCGACGATGAAAATGAATCGAGTGGTATGCGACTGTGTTTATCTTATTTTAGAAGGATGTTGTTCGAAACGGTGGCTCCTGATTATATAACTTTTAATAGTTTGATTTGTTTATGTACTCAGTTTTGTGATGCTGAGATGGGAATGCAGTTGCATTGTTTTACCGTGAAAATTGGATTTGATTTGGATTGTTTTGTTGGTTGTGCTCTTGTTGATTTATATGCAAAATGTGGTTTGGTTGAGAATGCAAGGAGGGTTTTTTGTGTTGTTCCATTTAGAGATTTGGTTATGTGGAATGTGATGATTTCTTGCTATGTCTTCAATTGTTCACCAGCAGAGGCTTTTAGCTTGTTCAATTTGATGCGGTTGGATGTTGAGAATGGGGATGAGTTTACTTTTAGTAGCTTGCTTAGTGTAATAAGTGATGATGCTTTGGAATATTACGATTTTGGAAAGCAAGTTCATAGTCTTGTTCTGAGACAGTCATTTGATTCGGATGTTTTAGTGGCTAGTGCATTGATCAATATGTATGCCAAAAACAAAAATATAATCGATGCACGTAGAGTATTTGATGAGTTGTCGATTCGAAATGTTGTGTCATGGAATACAATGATTGTTGGGTGTGGGAATCACGGTGATGGTAATGAGGTTATGAAGCTTCTCAGAGAGATGCTTCGTGAAGGGTTTCTTCCTGATGAACTGACTATTTCTAGCATTCTAAGTTCGTGTGGTTATGCTTCTGCCATTACCGAAACACTGCAAGTGCATGCTTTTGCGGTTAAATTATCATATCAAGATTTTTTATCTGTTGCCAATTCTTTGATTAGTGCTTACTCCAAATGTGGTAGCATTACTAGTGCATTTAAATGCTTTGAATTATCTTCACAGCCTGATCTAGTTACATGGACTTCATTGATATATGCATATGCATTCCATGGTCTTGCCGAAAAAGCAACTGAGATGTTTGAAAAGATGCTGTCCTGCGGCATGAAACCAGATCAAATTGCTTTTCTCGGCATTCTGTCAGCTTGTGCTCATTGCGGGCTAGTGACAAAGGGACTTCACTACTTCAAATTAATGACCAACGTGTATCGGATTGTTCCTGATTCAGAACATTACACTTGTCTTGTTGATCTCCTAGGAAGAAATGGTCTTATAAATGAAGCTTTTGAAATCTTGAGGTCAATGCCAATTGAAGCTGATTCAGACACCTTAGGCGCATTTATTGGATCTTGCAAACTACATTCAAATATGGAACTGGCTAAATTGGCTGCAGAAAAACTCTTTTTAATTGAACCAGAAAAGAGTGTAAACTATACAGTCATGTCTAACATTTATGCTTCTCAGAAACATTGGTCTGATGCGGAAAGAATTCGCAAAACGATGGAAGATAAACATGATAACAAAGTTCCAGGTTGTAGTTGGATAGAGATTGGTAATCAAGTTCATTCATTTGTATCCAATGATAAATCACATCCTAATGCTTTAGAAATGTATGCTACATTAAACATGCTGCATAGGCCAATGAAGGAACAAAATGATATGAATTTGTAA	1971	0.3739	MFFKLYFKKHFPFPPFPFSFFTKCFCFSSHQPHPWSFSSRVRASMPNPNQTHFNDPNTVHLFCSNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQETRDAEKLFDGLPVRNVVSWNIMIRGIVGSCDDENESSGMRLCLSYFRRMLFETVAPDYITFNSLICLCTQFCDAEMGMQLHCFTVKIGFDLDCFVGCALVDLYAKCGLVENARRVFCVVPFRDLVMWNVMISCYVFNCSPAEAFSLFNLMRLDVENGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKNKNIIDARRVFDELSIRNVVSWNTMIVGCGNHGDGNEVMKLLREMLREGFLPDELTISSILSSCGYASAITETLQVHAFAVKLSYQDFLSVANSLISAYSKCGSITSAFKCFELSSQPDLVTWTSLIYAYAFHGLAEKATEMFEKMLSCGMKPDQIAFLGILSACAHCGLVTKGLHYFKLMTNVYRIVPDSEHYTCLVDLLGRNGLINEAFEILRSMPIEADSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYTVMSNIYASQKHWSDAERIRKTMEDKHDNKVPGCSWIEIGNQVHSFVSNDKSHPNALEMYATLNMLHRPMKEQNDMNL*	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1328	656	Pfam	PPR repeat	310	333	IPR002885	-
	Mal5g1328	656	Pfam	PPR repeat	235	261	IPR002885	-
	Mal5g1328	656	Pfam	PPR repeat	411	431	IPR002885	-
	Mal5g1328	656	Pfam	PPR repeat family	436	484	IPR002885	-
	Mal5g1328	656	Pfam	PPR repeat family	335	382	IPR002885	-
	Mal5g1328	656	Pfam	PPR repeat	505	535	IPR002885	-
	Mal5g1328	656	Pfam	E motif	554	616	IPR046848	-
	Mal5g1328	656	Gene3D	Tetratricopeptide repeat domain	407	647	IPR011990	GO:0005515
	Mal5g1328	656	PANTHER	OS07G0259400 PROTEIN	44	636	-	-
	Mal5g1328	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	437	471	IPR002885	-
	Mal5g1328	656	PANTHER	OS07G0578800 PROTEIN-RELATED	44	636	IPR045215	GO:0003723\|GO:0009451
	Mal5g1328	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	336	370	IPR002885	-
	Mal5g1328	656	TIGRFAM	PPR: pentatricopeptide repeat domain	235	261	IPR002885	-
	Mal5g1328	656	TIGRFAM	PPR: pentatricopeptide repeat domain	439	472	IPR002885	-
	Mal5g1328	656	TIGRFAM	PPR: pentatricopeptide repeat domain	338	372	IPR002885	-
	Mal5g1328	656	TIGRFAM	PPR: pentatricopeptide repeat domain	512	535	IPR002885	-
	Mal5g1328	656	Gene3D	Tetratricopeptide repeat domain	288	404	IPR011990	GO:0005515
	Mal5g1328	656	Gene3D	Tetratricopeptide repeat domain	188	287	IPR011990	GO:0005515
	Mal5g1328	656	Gene3D	Tetratricopeptide repeat domain	47	187	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1328	Mal-Chr5	23298600	23300570	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g1328	62	650	Glycoside Hydrolase	AT3G49170	33.500	8.46e-110	349

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g1328	-		-	gmx:100778378	937.176