Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1171 ATGGCGAGAGTTAAGCACATTCCTCGTCCTGGTAAACGTACTCGCAGTAGTGGTGCAAGTGCAAATGAGTCTCAGGAAAGAAAGAAAAGAAGGAATAAGCCAGGAACAGTATCACTTCGTGAGATTCGTAAATTGCAGAAAGCTGTTAAGTTGCTTATACCTACTGCTCCCTTTGTTAGATGCGTCAAACAGATTACAAACACACTATCTATGGAGGTATCGCGCTGGACGGCTGAAGCCTTACTAGCACTTCAGGAGGCAGCTGAGGATTATCTGGTTCATATGTTTGAATATGGAATGCTCTGTGCACTTCATGCAAGGCGTGTTACCCTTATGAAAAAGGATATCGAGTTGACCCGTAGGCTTACAGGAATAGGAGTGCGTTTGTGA 390 0.4436 MARVKHIPRPGKRTRSSGASANESQERKKRRNKPGTVSLREIRKLQKAVKLLIPTAPFVRCVKQITNTLSMEVSRWTAEALLALQEAAEDYLVHMFEYGMLCALHARRVTLMKKDIELTRRLTGIGVRL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1171 129 SUPERFAMILY Histone-fold 15 125 IPR009072 GO:0046982
Mal5g1171 129 SMART h35 24 127 IPR000164 GO:0000786|GO:0003677|GO:0030527
Mal5g1171 129 Gene3D Histone, subunit A 2 125 IPR009072 GO:0046982
Mal5g1171 129 MobiDBLite consensus disorder prediction 22 39 - -
Mal5g1171 129 PANTHER HISTONE H3 13 126 IPR000164 GO:0000786|GO:0003677|GO:0030527
Mal5g1171 129 Pfam Core histone H2A/H2B/H3/H4 8 122 IPR007125 GO:0003677
Mal5g1171 129 MobiDBLite consensus disorder prediction 1 39 - -
Mal5g1171 129 PRINTS Histone H3 signature 8 22 IPR000164 GO:0000786|GO:0003677|GO:0030527
Mal5g1171 129 PRINTS Histone H3 signature 24 45 IPR000164 GO:0000786|GO:0003677|GO:0030527
Mal5g1171 129 PRINTS Histone H3 signature 89 105 IPR000164 GO:0000786|GO:0003677|GO:0030527
Mal5g1171 129 PRINTS Histone H3 signature 105 126 IPR000164 GO:0000786|GO:0003677|GO:0030527
Mal5g1171 129 PRINTS Histone H3 signature 48 65 IPR000164 GO:0000786|GO:0003677|GO:0030527
Mal5g1171 129 PANTHER HISTONE H3-LIKE CENTROMERIC PROTEIN HTR12 13 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1171 Mal-Chr5 20946064 20951084 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1171 K11253 - gmx:100811872 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1171 5 20946064 20951084 Mal5g1171 5 20946064 20951084 ECH