Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1166 ATGACATTTTGCATCTTCTCTAAGCACCAAATCTTCATGAACAATCTATCACCTTTTCATCACCTTAATCCTTATTCTCTTCACAACCCAAAATCCCTAATGCTACCAAAAAGCCTTTCACCAACTTCAATTTCACTTCCACCACCAGAAACCCATTTCTTTCCTCCTTCTTCTATCCCATTTTCACCACCAAAATTTTCTCTATTTTTTCACCCTTTTGGTGATTTGAATGAGTTAAGAACTTTGAATTCTGTCAAGGAGTTGCATGCCCAGAAGTTGAAATTGCCTAAAAATGATGACTTTGTTACAATAGATGGAACCATGATGAGAAACTATTTGGAGTTTGGTGATTTTGTGTCAGCAATAAAGGTTTTCTTTGTGGGTTTTACAAGGAATTATCTTTTGTGGAACTCTTTTCTTGAGGAATTTGAAAGTTTTGGAGGTGACCCATTTGAGATTTTGGTGGTTTTCAATGAATTGTATAGTAAAGGAGTTGAATTTGATAGCAAAGCTTTCACCTTTGTTTTGAAAATTTGCTTGGATTTAAGGGATTTGTTGTTTGGTTTGAAAGTTCATGCTTGTTTGATCAAAAAAGGGTTTCATGTTGATGTACACTTGAGTTGTGCATTGATCAATTTCTATGAGAAGTGTTGGAGTATAGATAAAGCTAATCAAGTATTTCATGAGACTCCTTATAAAGAAGATTTTTTGTGGAATACAATAGTTATGGCAAATTTGAGGAGTGAGAGGTGGAAGAATGCCTTAGAATTGTTCTGTAACATGCAGAGAGTTTCTGCCAAAGCCACTTCTGGCACCATTGTGAAGATGTTGCAAGCATGTGGAAAATTAAGAGCTTTGAATGAAGGGAAACAGCTTCATGGGTATGCTTTAAGATTTGGACTAGTTTCAAATACTTTAGTTTGCAATTCAATTATTAGCATGTACTCTAGAAACAGTAGATTCAAACTAGCTAGGTTGGTTTTCGATTCGATGGAGGATCGTAATCGTAACTTATCGTCTTGGAACTCGATAATTTTTAGTTATGCTGTTGATGGCTGTTTGAATGATGCATTGGATATTATCATCAAAAGAATGGAGTGTTCCGGTATTAAACCAGACATTATAACATGGAATTCGGTGTTGTCTGGTTATCTTCATCGGGGGTCATTTGAAATGGTTCTCACTAGTTTTCGGAGCCTGCGAAATGCAGGCTTCAAGCCGGATTCGTGCTCGGTAACTAGTGCTCTACAAGCAGTTATTGAATTAGGTTTCTTTAAATTAGGGAAAGAAATCCATGTTTACGTACTGAGAAGCAATCTTAACTATGATGTCTATGTTTGTACATCACTGGTGGATATGTATGTTAAGAATGATTGCTTAGAAAAAGCTCATGCAGTGCTCCATCGTGCGAAAAACAAAAACGTTTACGCTTGGAATTCGTTGATATCAGGTTACTCCTTCAAGGGAATGTTTGGTGAAGCCGAAAAACTATTGAACCAAATGGAGGAGGAAGGGATAGCACCTGATTTAGTGACATGGAACGGTTTGGTTTCTGGTTATTCAATGCGAGGCCGAATCGAGGAAGCTTTGGCTATCATCAATCGGATCAAGAGTTCCGGAATCACTCCTAATGTGGTGTCTTGGACCGCTTTGATATCAGGATGTTCTCAAAACGAGAAGTACATGGACGCCCTACAGATTTTCAGCCAAATGCAAGCCGAGAATGTAAAACCTAACTCGACAACGATTTGTAGCTTACTTTGTGCATGTGCAGGTCCATCTCTGTTGAAGAAAGGTGAAGAGATACATTGCTTTAGTATGAAACTAGGGTTTGTGGATGATATATACATCGCAACAGCACTCATTGACATGTATAGTAAAGCAGGAAAATTAAAAGTAGCCTACAATGTTTTCAACAAAATTCAAGAGAAAACACTTCCATGTTGGAATTGCATGATGATGGGATATGCCATTCATGGCAATGGAGAAGAAGTAATGATTCTTTACGACAAGATGCGCGAAAGATGTATTAGACCTGACGCGATAACGTTCACGGCTCTTCTATCTGGCTGCAAGAATTTGGGTTTAGTCGATGAAGGATGGAAGTATTTTGACAGTATGCGAGAAGATTACAATATTGTTCCAACAATTGAGCACTACTGTTGCATGGTAGATCTCCTTGGAAAATCTGGTTTTCTTGACGAAGCTTTGGATTTCATCAAAACTATGCCAATTAAGCCGGATGCGAGTATTTGGGGTGCTCTTCTTGCATCCTGCAGAATTCACAAAAACATTAAGCTAGCAGAGATTGCGGCAAAGAAGCTTTTCAAGATGGAACCGAATAATTCTGCTAACTATCTTTTGATGATGAATTTATATTCAACTTTGAACCGATGGAACGACGTGGAGCGTCTTAAACGGTCGATGACTGTGTTGGCGATGAAAAGTCCACCTGTCTGGAGCTGGACACAAATTAATCAGACTATTCATGTGTTTTCGACAGAAGGAAAACCGCATCCGGAAGAAGGGGAAATATATTTCGAGTTATATCGATTAATTTTGGAAATACGGAAGCTTGGATATGTACCTGATCTCAATTGTGTATGTCAGAACATTGATGACAATGAGAAAGAGAAGATTCTTATGAGTCACACTGAGAAGTTGGCAATGGTATATGGAGTGATGAAAATGAAAGGTGGATCACCGATTAGGATTGTTAAGAACACAAGAATTTGTTGCGACTGTCATACAGTAGCAAAGTACATTTCTTTGATTCGAAAATGCGAGATTTTACTTCGAGACGGTGGCCGTTTTCACCATTTTAAAAATGGAAAGTGTGCTTGTAATGATTGTTGGTAA 2859 0.3806 MTFCIFSKHQIFMNNLSPFHHLNPYSLHNPKSLMLPKSLSPTSISLPPPETHFFPPSSIPFSPPKFSLFFHPFGDLNELRTLNSVKELHAQKLKLPKNDDFVTIDGTMMRNYLEFGDFVSAIKVFFVGFTRNYLLWNSFLEEFESFGGDPFEILVVFNELYSKGVEFDSKAFTFVLKICLDLRDLLFGLKVHACLIKKGFHVDVHLSCALINFYEKCWSIDKANQVFHETPYKEDFLWNTIVMANLRSERWKNALELFCNMQRVSAKATSGTIVKMLQACGKLRALNEGKQLHGYALRFGLVSNTLVCNSIISMYSRNSRFKLARLVFDSMEDRNRNLSSWNSIIFSYAVDGCLNDALDIIIKRMECSGIKPDIITWNSVLSGYLHRGSFEMVLTSFRSLRNAGFKPDSCSVTSALQAVIELGFFKLGKEIHVYVLRSNLNYDVYVCTSLVDMYVKNDCLEKAHAVLHRAKNKNVYAWNSLISGYSFKGMFGEAEKLLNQMEEEGIAPDLVTWNGLVSGYSMRGRIEEALAIINRIKSSGITPNVVSWTALISGCSQNEKYMDALQIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEEIHCFSMKLGFVDDIYIATALIDMYSKAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHGNGEEVMILYDKMRERCIRPDAITFTALLSGCKNLGLVDEGWKYFDSMREDYNIVPTIEHYCCMVDLLGKSGFLDEALDFIKTMPIKPDASIWGALLASCRIHKNIKLAEIAAKKLFKMEPNNSANYLLMMNLYSTLNRWNDVERLKRSMTVLAMKSPPVWSWTQINQTIHVFSTEGKPHPEEGEIYFELYRLILEIRKLGYVPDLNCVCQNIDDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICCDCHTVAKYISLIRKCEILLRDGGRFHHFKNGKCACNDCW* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1166 952 Pfam PPR repeat 619 644 IPR002885 -
Mal5g1166 952 Pfam PPR repeat 719 743 IPR002885 -
Mal5g1166 952 Pfam PPR repeat 308 335 IPR002885 -
Mal5g1166 952 Pfam PPR repeat 237 263 IPR002885 -
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 372 IPR002885 -
Mal5g1166 952 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 232 940 - -
Mal5g1166 952 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 154 230 - -
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Mal5g1166 952 Gene3D Tetratricopeptide repeat domain 425 599 IPR011990 GO:0005515
Mal5g1166 952 Gene3D Tetratricopeptide repeat domain 698 828 IPR011990 GO:0005515
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 710 IPR002885 -
Mal5g1166 952 Pfam PPR repeat family 648 691 IPR002885 -
Mal5g1166 952 Pfam PPR repeat family 473 520 IPR002885 -
Mal5g1166 952 Pfam PPR repeat family 543 591 IPR002885 -
Mal5g1166 952 Pfam DYW family of nucleic acid deaminases 860 952 IPR032867 GO:0008270
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Mal5g1166 952 Pfam Pentatricopeptide repeat domain 337 384 IPR002885 -
Mal5g1166 952 Gene3D Tetratricopeptide repeat domain 302 424 IPR011990 GO:0005515
Mal5g1166 952 Gene3D Tetratricopeptide repeat domain 600 697 IPR011990 GO:0005515
Mal5g1166 952 PANTHER OS05G0586900 PROTEIN 232 940 - -
Mal5g1166 952 PANTHER OS05G0586900 PROTEIN 154 230 - -
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Mal5g1166 952 Gene3D Tetratricopeptide repeat domain 145 285 IPR011990 GO:0005515
Mal5g1166 952 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 334 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 307 335 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 476 509 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 682 716 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 648 681 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Mal5g1166 952 TIGRFAM PPR: pentatricopeptide repeat domain 511 545 IPR002885 -
Mal5g1166 952 Pfam E motif 762 824 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1166 Mal-Chr5 20908201 20911059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1166 168 952 Glycoside Hydrolase AT3G49170 30.576 2.10e-132 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1166 - - mtr:MTR_8g027810 1720.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1166 5 20908201 20911059 Mal5g1166 5 20908201 20911059 ECH