Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1084 ATGAATCAAGTGAAACAAATTCATGGTTACACAGTAAGAAATAACATAGACAACACCAAAATCCTCATAGAAAAACTACTTCAAATCCCAAACCTAAACTATGCCCAACGAGTGTTACACCATTCACAAAAACCAACCACTTTCCTCTACAACAAACTCATTCAAGCCTATTCCTTAAAACACCAAAACCAACATCAATGTTTCACCCTTTACTCACAAATGTGCCTTCTTGGTCACTCACCAAATCAATACACTTTCAACTTCCTTTTCACTACATGTACCTCACTTTCCTCACTTTCCCTTGGCCAAATGATCCATACCCGGTTCATGAAATCGGGTTTTAAACATGATGTTTTTGCTTCCACTGCTTTGCTTGATATGTACGCTAAATTGGGTTGTTTGAAACTTGCATGCTATGTGTTTGATGAAATGTCTATGAGAGAGTTAGCTACGTGGAATGCGATGATGGCGGGGTGTGCGAGGTTTGGTGATATGGAAAGAGCGTTAGAGTTGTTTAGGTTGATGCCTTGTAGGAATGTGGTGTCGTGGACTACTATGGTATCGGGTTACTCGCAGAATAAGCAGTATGAGAAGGCTTTGGGGTTGTTTCTGAGGATGGAAAGGGAGAAAGACGTAGTTGCTAATGAAGTGACATTGGCGAGTGTTTTGCCAGCTTGTGCGAATCTTGGGGCACTTGAGATTGGTCAGAGGGTTGAAGTATATGCGAGGAAAAATGGGTTTTTTAAGAATTTGTTTGTGAGCAATGCTGTTTTGGAGATGTATGCAAAATGTGGGAAGATTGATGTTGCTTGGAAGGTGTTTGGTGAGATAGGTAGATTCAGAAACTTGTGCTCTTGGAATTCGATGATCATGGGTTTGGCTGTTCATGGACAGTGTCACAAGGCCGTTCAGCTTTATGATCAAATGTTGAAAGAAGGAACTTTGCCGGATGACGTTACATTCGTGGGGCTTCTTTTGGCATGCACACATGGAGGCATGGTTGAAAAAGGCAAGCATATTTTCCAGTCAATGACAAGAAACTTCAACATTATTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTACTTGGCCGTGCCGGGAGATTAACAGAAGCTTATGAGGTCATAAAAAGAATGCCAATGAAGCCAGATTCAGTAATATGGGGTACTTTGTTGGGGGCTTGCAGTTTCCATGGTAATGTTGAATTGGCTGAGATAGCAGCTAAGTCTTTATTTGTACTCGAGCCTTGGAATCCAGGAAATTACGTCATTCTTTCGAACATTTATGCATCCGCTGGCCAATGGGACGGAGTCGCAAAGCTCAGGAAGGTGATGAAGGGAAGCAAGATTACAAAGACAGCAGGACATAGCTTCATTGAAGAGGGAGGTCAACTGCATAAGTTCATTGTGGAGGATAGATCACATTCAGAAAGTAACGAAATTTTTGCTTTGCTGGATGGAGTTTATGAAATGATAAAGTTTAATAAAAATGAATATGAATGTCATTTGGATTTTGATTTGATCAACCAATCATAG 1539 0.4087 MNQVKQIHGYTVRNNIDNTKILIEKLLQIPNLNYAQRVLHHSQKPTTFLYNKLIQAYSLKHQNQHQCFTLYSQMCLLGHSPNQYTFNFLFTTCTSLSSLSLGQMIHTRFMKSGFKHDVFASTALLDMYAKLGCLKLACYVFDEMSMRELATWNAMMAGCARFGDMERALELFRLMPCRNVVSWTTMVSGYSQNKQYEKALGLFLRMEREKDVVANEVTLASVLPACANLGALEIGQRVEVYARKNGFFKNLFVSNAVLEMYAKCGKIDVAWKVFGEIGRFRNLCSWNSMIMGLAVHGQCHKAVQLYDQMLKEGTLPDDVTFVGLLLACTHGGMVEKGKHIFQSMTRNFNIIPKLEHYGCMVDLLGRAGRLTEAYEVIKRMPMKPDSVIWGTLLGACSFHGNVELAEIAAKSLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKTAGHSFIEEGGQLHKFIVEDRSHSESNEIFALLDGVYEMIKFNKNEYECHLDFDLINQS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1084 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Mal5g1084 512 PANTHER OS06G0125600 PROTEIN 2 461 - -
Mal5g1084 512 SUPERFAMILY TPR-like 6 319 IPR011990 GO:0005515
Mal5g1084 512 Pfam E motif 399 461 IPR046848 -
Mal5g1084 512 Pfam PPR repeat family 178 227 IPR002885 -
Mal5g1084 512 Pfam PPR repeat family 282 328 IPR002885 -
Mal5g1084 512 Pfam PPR repeat family 45 93 IPR002885 -
Mal5g1084 512 Gene3D Tetratricopeptide repeat domain 300 482 IPR011990 GO:0005515
Mal5g1084 512 Gene3D Tetratricopeptide repeat domain 149 245 IPR011990 GO:0005515
Mal5g1084 512 Gene3D Tetratricopeptide repeat domain 19 148 IPR011990 GO:0005515
Mal5g1084 512 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 461 - -
Mal5g1084 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Mal5g1084 512 TIGRFAM PPR: pentatricopeptide repeat domain 181 215 IPR002885 -
Mal5g1084 512 TIGRFAM PPR: pentatricopeptide repeat domain 151 180 IPR002885 -
Mal5g1084 512 TIGRFAM PPR: pentatricopeptide repeat domain 357 380 IPR002885 -
Mal5g1084 512 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Mal5g1084 512 TIGRFAM PPR: pentatricopeptide repeat domain 122 146 IPR002885 -
Mal5g1084 512 Pfam PPR repeat 255 278 IPR002885 -
Mal5g1084 512 Pfam PPR repeat 122 146 IPR002885 -
Mal5g1084 512 Pfam PPR repeat 356 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1084 Mal-Chr5 19194181 19196103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1084 5 494 Glycoside Hydrolase AT3G49170 33.803 1.43e-89 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1084 - - gmx:100790321 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1084 5 19194181 19196103 Mal5g1084 5 19194181 19196103 ECH