Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0780 ATGTCTTGGGCAGCTCCTGAGGATCTCTACCTCTCTACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTATATTGCTAAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCTGTTCTTGAGGGTGCCTGTGAGAGGGTAATTGTTGGTGATCTATATTGCGACATCCCTCTGGGTCTTTATGTAATCCGTGGAGAGAATGTTGTTCTAATTGGGGAGATGGATGTGGAGAGGGAGGAACTCCCCCCACATATGACGCGTGTTCCTACAGAAGAAATCAGGAGGGCACAGAAAGTAGAAAGGGATGCTTCAGAACTGAAAGGGACTATGCGAAAAAGAATGGAGTTCCTTGACTTGGATTAG 387 0.447 MSWAAPEDLYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEMDVEREELPPHMTRVPTEEIRRAQKVERDASELKGTMRKRMEFLDLD* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0780 128 CDD LSm1 12 82 IPR034104 GO:0000956
Mal5g0780 128 PANTHER LSM1 2 127 IPR044642 -
Mal5g0780 128 Pfam LSM domain 14 80 IPR001163 -
Mal5g0780 128 Gene3D - 12 125 - -
Mal5g0780 128 SMART Sm3 13 81 IPR001163 -
Mal5g0780 128 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
Mal5g0780 128 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 2 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0780 Mal-Chr5 12831877 12834864 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0780 K12620 - rcu:8279030 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0780 5 12831877 12834864 Mal5g0780 5 12831877 12834864 ECH